PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | bHLH | ||||||||
Protein Properties | Length: 186aa MW: 20740.1 Da PI: 8.09 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 8.3e-11 | 1 | 68 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC......................TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkas...................kapskKlsKaeiLekAveYIksLq 55 ++Er+RR++iN++f eL l+P + p ++K +iL+ A++Y+k+Lq EMT32260 1 MAERKRREKINQRFIELSALIPGLKkvfeyvespvgkclidlvtLFPFDQMDKGTILTVATRYVKELQ 68 58*********************777******************999999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 9.8E-15 | 1 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.22E-10 | 1 | 72 | No hit | No description |
SMART | SM00353 | 1.6E-8 | 1 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.72E-13 | 1 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.224 | 1 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-8 | 1 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MAERKRREKI NQRFIELSAL IPGLKKVFEY VESPVGKCLI DLVTLFPFDQ MDKGTILTVA 60 TRYVKELQER VRSLEAAGGN HRSVETVVLV RKPCRPVAPD DGEGSARFLL AAGTPATGNQ 120 LPEIEAKLSE DNVMVRIHCE MNGKGLVSRV LTEVEELHLR IVHNDVMPFT ASTVIITTMA 180 KASYHQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 7 | ERKRRE |
2 | 3 | 8 | RKRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170214.1 | 1e-104 | transcription factor NAI1-like | ||||
TrEMBL | M8C4Q5 | 1e-134 | M8C4Q5_AEGTA; Transcription factor bHLH25 | ||||
STRING | EMT32260 | 1e-135 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 1e-26 | bHLH family protein |