PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT31541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 680aa MW: 74011.5 Da PI: 7.6886 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.8 | 5.2e-08 | 585 | 634 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E ellv+av++lG g+Wk + ++ + Rt ++k++w ++ EMT31541 585 RRPFSVAEVELLVEAVELLGFGRWKNVKNHAFrdnEERTYVDLKDKWKNL 634 678999*************************99**99**********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 2.5E-7 | 401 | 474 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 8.807 | 406 | 470 | IPR000626 | Ubiquitin domain |
Gene3D | G3DSA:3.10.20.90 | 2.6E-4 | 407 | 474 | No hit | No description |
CDD | cd01769 | 0.00584 | 410 | 475 | No hit | No description |
PROSITE profile | PS51294 | 16.171 | 580 | 639 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-10 | 581 | 636 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.37E-12 | 582 | 637 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-8 | 584 | 637 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-6 | 585 | 634 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.11E-15 | 586 | 636 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MVFRKKSEGG SVVRRPRKPR DTTLAPVKRS ARLKKKQMYA LDLLATVAES LSSDEDDYST 60 ESDQDVAAAS HNSDRASVKA EQFDEAPQLN STALENDCCR GYTVGCDGIC ASLGQTSIRK 120 TEDLSTQNVA DTVEGSLIEK ADADNLLTQN VADAAAEPLI EKKPDVFAEG SLVSCTKPSL 180 LDCGLGTIPE YGTIGVCHPC FPTSADVKQV HQATPAIIRS LVDGNAAALH GLVDTMDLDV 240 KPSVLNSESS SGVHFGGHDN GHRASPFYPV QVQHAADIDN DEKSTRCVLP STSGSKGGYL 300 PNKGDCRTRR LLSTRMRKAA RNKMCGELPN KGSKFGGKKI SATRRRAQMQ RMLKTKKVVE 360 CYSAQPSDEG VLTETSGTSC SRGGQDPTCA SESSQRKPCA SEGCNVKFII KSFNIPELSI 420 EVPENATVGS LKRIVMDAVT SKVEGSLSVS VLLQGKIIQD DNKTLHQAGI CHGAKPDSIG 480 FTLECEAKQD SRPSGIAPEE MDSAGPSVVN PLSKISYTPP FSRIKFEQPF ISCTLGDYPY 540 EGAAQVRPEI CQAIVPYGTS NPDVLAIVPV VPRSRQRDFG QRRKRRPFSV AEVELLVEAV 600 ELLGFGRWKN VKNHAFRDNE ERTYVDLKDK WKNLVHTASI PPQLRRGRAI PPQDLLDRVL 660 AAQAYWTVHH AKRDEEEGRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2roh_A | 2e-41 | 556 | 668 | 3 | 113 | Telomere binding protein-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269|PubMed:10811811, ECO:0000269|PubMed:17586654}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373377 | 0.0 | AK373377.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3028O09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194084.1 | 0.0 | telomere-binding protein 1-like | ||||
Swissprot | Q9LL45 | 0.0 | TBP1_ORYSJ; Telomere-binding protein 1 | ||||
TrEMBL | M8D5B1 | 0.0 | M8D5B1_AEGTA; Telomere-binding protein 1 | ||||
STRING | EMT31541 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10824 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-51 | TRF-like 2 |
Publications ? help Back to Top | |||
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