PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT31541

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB_related

Protein Properties

Length: 680aa MW: 74011.5 Da PI: 7.6886

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT31541	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	5.2e-08	585	634	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E ellv+av++lG g+Wk + ++ + Rt ++k++w ++ EMT31541 585 RRPFSVAEVELLVEAVELLGFGRWKNVKNHAFrdnEERTYVDLKDKWKNL 634 678999***********************9999**********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54236	2.5E-7	401	474	IPR029071	Ubiquitin-related domain
PROSITE profile	PS50053	8.807	406	470	IPR000626	Ubiquitin domain
Gene3D	G3DSA:3.10.20.90	2.6E-4	407	474	No hit	No description
CDD	cd01769	0.00584	410	475	No hit	No description
PROSITE profile	PS51294	16.171	580	639	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-10	581	636	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.37E-12	582	637	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-8	584	637	IPR001005	SANT/Myb domain
Pfam	PF00249	8.2E-6	585	634	IPR001005	SANT/Myb domain
CDD	cd11660	2.11E-15	586	636	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MVFRKKSEGG SVVRRPRKPR DTTLAPVKRS ARLKKKQMYA LDLLATVAES LSSDEDDYST 60 ESDQDVAAAS HNSDRASVKA EQFDEAPQLN STALENDCCR GYTVGCDGIC ASLGQTSIRK 120 TEDLSTQNVA DTVEGSLIEK ADADNLLTQN VADAAAEPLI EKKPDVFAEG SLVSCTKPSL 180 LDCGLGTIPE YGTIGVCHPC FPTSADVKQV HQATPAIIRS LVDGNAAALH GLVDTMDLDV 240 KPSVLNSESS SGVHFGGHDN GHRASPFYPV QVQHAADIDN DEKSTRCVLP STSGSKGGYL 300 PNKGDCRTRR LLSTRMRKAA RNKMCGELPN KGSKFGGKKI SATRRRAQMQ RMLKTKKVVE 360 CYSAQPSDEG VLTETSGTSC SRGGQDPTCA SESSQRKPCA SEGCNVKFII KSFNIPELSI 420 EVPENATVGS LKRIVMDAVT SKVEGSLSVS VLLQGKIIQD DNKTLHQAGI CHGAKPDSIG 480 FTLECEAKQD SRPSGIAPEE MDSAGPSVVN PLSKISYTPP FSRIKFEQPF ISCTLGDYPY 540 EGAAQVRPEI CQAIVPYGTS NPDVLAIVPV VPRSRQRDFG QRRKRRPFSV AEVELLVEAV 600 ELLGFGRWKN VKNHAFRDNE ERTYVDLKDK WKNLVHTASI PPQLRRGRAI PPQDLLDRVL 660 AAQAYWTVHH AKRDEEEGRD

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MVFRKKSEGG SVVRRPRKPR DTTLAPVKRS ARLKKKQMYA LDLLATVAES LSSDEDDYST  60
ESDQDVAAAS HNSDRASVKA EQFDEAPQLN STALENDCCR GYTVGCDGIC ASLGQTSIRK  120
TEDLSTQNVA DTVEGSLIEK ADADNLLTQN VADAAAEPLI EKKPDVFAEG SLVSCTKPSL  180
LDCGLGTIPE YGTIGVCHPC FPTSADVKQV HQATPAIIRS LVDGNAAALH GLVDTMDLDV  240
KPSVLNSESS SGVHFGGHDN GHRASPFYPV QVQHAADIDN DEKSTRCVLP STSGSKGGYL  300
PNKGDCRTRR LLSTRMRKAA RNKMCGELPN KGSKFGGKKI SATRRRAQMQ RMLKTKKVVE  360
CYSAQPSDEG VLTETSGTSC SRGGQDPTCA SESSQRKPCA SEGCNVKFII KSFNIPELSI  420
EVPENATVGS LKRIVMDAVT SKVEGSLSVS VLLQGKIIQD DNKTLHQAGI CHGAKPDSIG  480
FTLECEAKQD SRPSGIAPEE MDSAGPSVVN PLSKISYTPP FSRIKFEQPF ISCTLGDYPY  540
EGAAQVRPEI CQAIVPYGTS NPDVLAIVPV VPRSRQRDFG QRRKRRPFSV AEVELLVEAV  600
ELLGFGRWKN VKNHAFRDNE ERTYVDLKDK WKNLVHTASI PPQLRRGRAI PPQDLLDRVL  660
AAQAYWTVHH AKRDEEEGRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2roh_A	2e-41	556	668	3	113	Telomere binding protein-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds the telomeric double-stranded 5'TTTAGGG-3' repeat and regulates telomere length and structure. {ECO:0000269\|PubMed:10811811, ECO:0000269\|PubMed:17586654}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373377	0.0	AK373377.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3028O09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194084.1	0.0	telomere-binding protein 1-like
Swissprot	Q9LL45	0.0	TBP1_ORYSJ; Telomere-binding protein 1
TrEMBL	M8D5B1	0.0	M8D5B1_AEGTA; Telomere-binding protein 1
STRING	EMT31541	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10824	12	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-51	TRF-like 2

Publications ? help Back to Top
Yu EY, et al. Sequence-specific DNA recognition by the Myb-like domain of plant telomeric protein RTBP1. J. Biol. Chem., 2000. 275(31): p. 24208-14 [PMID:10811811] Hong JP, et al. Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice. Plant Cell, 2007. 19(6): p. 1770-81 [PMID:17586654] Ko S, et al. Solution structure of the DNA binding domain of rice telomere binding protein RTBP1. Biochemistry, 2009. 48(5): p. 827-38 [PMID:19152316] Mukherjee K,Pandey DM,Vidyarthi AS In silico characterization and analysis of RTBP1 and NgTRF1 protein through MD simulation and molecular docking - A comparative study. Interdiscip Sci, 2015. [PMID:25663113] Mukherjee K,Pandey DM,Vidyarthi AS In Silico Characterization and Analysis of RTBP1 and NgTRF1 Protein Through MD Simulation and Molecular Docking: A Comparative Study. Interdiscip Sci, 2015. 7(3): p. 275-86 [PMID:26289405]