PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT30658 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | Dof | ||||||||
Protein Properties | Length: 205aa MW: 20775.4 Da PI: 10.5269 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 70 | 3.7e-22 | 38 | 73 | 27 | 62 |
zf-Dof 27 sqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 Pr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+ EMT30658 38 GAPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 73 57*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 15.323 | 17 | 71 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-9 | 36 | 62 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-16 | 39 | 71 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MAGAAGGLLR LRWCSQPPLL ARGGAARSRP EPVAVALGAP RHFCKACKRY WTRGGTLRNV 60 PVGGGCRKNK RSRSSNGSGG RPGSCAVVAS SNAAAGGIAS STSMSLPPPG SLSSALGLHG 120 HGSSSLASLL LGSGASGGDH LGLFHAMQSV VSDATAYEMH QQHQTQVDQL LGLGYGAGDA 180 NGSQIHIKPW QQHLQDGAGG LFDGF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368979 | 0.0 | AK368979.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083D03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159095.1 | 1e-115 | dof zinc finger protein DOF5.8-like | ||||
TrEMBL | M8C976 | 1e-143 | M8C976_AEGTA; Dof zinc finger protein | ||||
STRING | EMT30658 | 1e-144 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8895 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 3e-12 | Dof family protein |