PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT30498 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | GeBP | ||||||||
Protein Properties | Length: 445aa MW: 49011 Da PI: 5.7199 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 107.3 | 1.1e-33 | 63 | 162 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97 lfqrlw+eeDeiv+L+++ +f+a++g+ +++ d++ fye +++++++++sksql eK+rrLK+K++++v++ + sg+ +sf+++h+q +fe+++ iW+ EMT30498 63 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTEPFYEEMRRRLQLDFSKSQLAEKLRRLKRKYRNCVERlRCSGNTFSFRSPHEQAVFEIARNIWR 162 79*************************9977778***************************************8889**********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.7E-30 | 64 | 161 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MVDDPSAAGA AASSSFPDAD AYGNGDSEDI DFPVDPIPNP PFSSAPVAAP ASATATVGER 60 RPLFQRLWTE EDEIVILRAF AEFTAQRGTA FASHQYDTEP FYEEMRRRLQ LDFSKSQLAE 120 KLRRLKRKYR NCVERLRCSG NTFSFRSPHE QAVFEIARNI WRPSSDKHGR DPNAADSEDD 180 ATITATNAAA NGDAKSPSSS KAHRRGRRRR TADLAADASE APQPYTSGPM PVKTEDSLPA 240 FFPHVSMDGA EPVVAPVVNT ESSVLTPLFK EMVRAMLGIG GCPSPLGLGA KVPEQPSAIL 300 GIPMDGEKWR QQRILELEVY LRRIDLLQDE IVVRNNMGII CLLVDADINT IVTLTAPIAT 360 YTGQITRAHA RQLNYQVLSF LGNDSNVQEN MMLPKLDTFV LLTNEGPGTD KRDEHWSKTK 420 HGDDGMRKGN KNGVTSDDFR TLKPP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250922 | 0.0 | AK250922.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf98d18, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169680.1 | 0.0 | probable transcription factor At3g04930 | ||||
Refseq | XP_020169681.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | M8C8T3 | 0.0 | M8C8T3_AEGTA; Uncharacterized protein | ||||
STRING | EMT30498 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 3e-33 | DNA-binding storekeeper protein-related transcriptional regulator |