PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT28877 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 355aa MW: 38462.2 Da PI: 6.1694 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3.1e-16 | 177 | 228 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a++k++g EMT28877 177 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAALKFRG 228 78****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.35E-6 | 97 | 143 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 0.001 | 97 | 148 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 8.86 | 115 | 142 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-6 | 115 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-18 | 177 | 237 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.6E-11 | 177 | 228 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.08E-11 | 177 | 238 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.7E-19 | 178 | 236 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.3E-32 | 178 | 242 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.348 | 178 | 236 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-5 | 179 | 190 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-5 | 218 | 238 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MSPPTNGSAS LPLTGLSDAV LFPFDGFSAD DFFATAPPPP PPPPLGADPG RLLLASSRND 60 VHASRDLAVA APVETTGSPS ALAPLPLTPS SCQRTSCYRG VTRWQFMPAC KYSGYEKEDR 120 AARAYDLAAL KYWGVNATTN FPKENYIREL EEMQNMSRQE LIASLRRKSS GFSRGASVYR 180 GVTRHHQHGR WQARIGRVAG NKDLYLGTFA TEEEAAEAYD IAALKFRGDN AVTNFEPSRY 240 NLEAIACSDL PVNGRRMSSH KPAVAAPEAQ GEITFVSSAP PIPQQSCSDV QVPPYVLHGL 300 LQLQASEPLH ALPLSSYSFG EPSFYWPFGD VEQMVQLDSK VEVAGGILQL ANSAV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109839 | 1e-124 | AK109839.1 Oryza sativa Japonica Group cDNA clone:002-148-D11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161337.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL7 | ||||
Swissprot | Q6PQQ3 | 5e-78 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | M8CN45 | 0.0 | M8CN45_AEGTA; AP2-like ethylene-responsive transcription factor AIL5 | ||||
STRING | EMT28877 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13579 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 7e-58 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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