PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28357
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 287aa    MW: 33015.3 Da    PI: 6.0569
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28357genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.4e-1320991599
              -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3 15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
              r++ p k a+++  ++  +++   tl+ +sg++W+v +  +k  ++ ++  GW eF+ka++L+e+D ++F+ +g+ +f   v +f++
  EMT28357 20 RISTPEKIANNFiwKIA-NGG--FTLKAPSGEEWRVGV--EKIADELFFMPGWVEFAKAHELQENDLLLFTCSGNGSF--DVLIFDA 99
              45556666644454322.233..8999***********..******99999********************9888777..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.63E-184102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.0556100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-178102IPR015300DNA-binding pseudobarrel domain
CDDcd100172.10E-14898No hitNo description
SMARTSM010192.0E-69100IPR003340B3 DNA binding domain
PfamPF023624.5E-101999IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-5189246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-5190247IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEDVSKISFF KLMTGDFQQR ISTPEKIANN FIWKIANGGF TLKAPSGEEW RVGVEKIADE  60
LFFMPGWVEF AKAHELQEND LLLFTCSGNG SFDVLIFDAS GCEKVSCFFA NKKGTNMHKQ  120
FKNIVGQQGE EHWKETESQK NNNYFLKNEA VEEEEESDDH HTESDYYYYS RFANCLSEDE  180
REEIFGLASI QLGNPVYVAV LQKTHVRRTK NFLIVPSKFA ADHLEGRSHE MLLLRPNRKE  240
KWYLKLYDAS APVCNLKANF LVRYRSSGTK YEHCECSLTP VLAPAGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193657.11e-138B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT51e-88Y1209_ORYSJ; B3 domain-containing protein LOC_Os12g40090
TrEMBLM8CLT40.0M8CLT4_AEGTA; B3 domain-containing protein
STRINGEMT283570.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-16B3 family protein