PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28355
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 403aa    MW: 46259.6 Da    PI: 7.5157
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28355genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-151061891199
               HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ++r+++p k a+++ g++ +++   tl+ +sg++W+v +  +k  ++ ++  GW+eF+ka++L+e+D + Fk +g+ +f   v +f+ 
  EMT28355 106 DFQQRISIPEKIANNFiGKIANGG--FTLKAPSGEEWRVGV--EKIADELFFMPGWEEFAKAHELQENDLLFFKCSGNGSF--DVLIFDP 189
               345689*******77787776665..9999***********..******99999********************9888777..8888875 PP
2B342.21.4e-133083941299
               HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
        B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
               +  r +++ kfa++h +g   +  +l l+  + ++W +k+ +++  ++ + ++ W++Fv++n L+eg +++F+l++  ++++++v+v+rk
  EMT28355 308 EIFRQIISSKFAADHlEGR--SYEMLLLRPNRKEKWCLKYYHSRVTRG-FNSRRWNKFVRDNMLREGYVCIFELMKGaRKATMTVHVLRK 394
               446789*********6444..333556666888*******55555544.57889*******************99877*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-2095192IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.32496190IPR003340B3 DNA binding domain
CDDcd100171.32E-1698188No hitNo description
Gene3DG3DSA:2.40.330.102.7E-1998192IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-1199190IPR003340B3 DNA binding domain
PfamPF023628.3E-13107188IPR003340B3 DNA binding domain
PROSITE profilePS5086310.334297395IPR003340B3 DNA binding domain
SMARTSM010192.7E-6300395IPR003340B3 DNA binding domain
CDDcd100171.50E-12301393No hitNo description
Gene3DG3DSA:2.40.330.106.8E-13303393IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-13307393IPR015300DNA-binding pseudobarrel domain
PfamPF023625.2E-12307394IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAAAALAVGR SGERETREGQ GEMKEKGKSA ASCMYAHTLL SLHRIHGFGA LATDKASCVS  60
AMVVAGEMMV DEKGRCGRCG EWQEHYYWEH MEDVSKIRFF KLMTGDFQQR ISIPEKIANN  120
FIGKIANGGF TLKAPSGEEW RVGVEKIADE LFFMPGWEEF AKAHELQEND LLFFKCSGNG  180
SFDVLIFDPS GCEKVSCFFA NKKGIKMRKQ FDNIVSQHGE EHCILSDSDD TSMPLSQLVR  240
STHKAPTSKK PTRPRNLHFC TIDVGKSSNY YLKNEVEQEE ESDDDHTESN NYYYSRIANC  300
LTEDEREEIF RQIISSKFAA DHLEGRSYEM LLLRPNRKEK WCLKYYHSRV TRGFNSRRWN  360
KFVRDNMLRE GYVCIFELMK GARKATMTVH VLRKVDDKFV LLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193657.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-123Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLM8BTK80.0M8BTK8_AEGTA; B3 domain-containing protein
STRINGEMT283550.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-28B3 family protein