PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19909
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 336aa    MW: 38526.4 Da    PI: 10.3116
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19909genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.68.4e-22351151298
               HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                + r+++p +f++++ g+  +++t++l +++g +++v++  +k+ ++ vl +GWk F++a++L++gDf+vFk+dg+se   +v +f 
  EMT19909  35 FHERMIIPDRFVQHFRGQ--TGRTIKLVSRHGYTFDVQI--TKNLEKLVLDSGWKAFARAHNLRTGDFLVFKYDGNSEL--KVLIFG 115
               4568********888888..4569***************..********************************997766..888775 PP
2B353.83.5e-172433328100
               -HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-SS CS
        B3   8 sdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrks 100
               s ++k++ l +++k+ae +       e+++ltl++ +g++Wev+++++k++g+ +lt GWk+F+  n+L+ gD+++F+l ++ ++  ++v ++rks
  EMT19909 243 SIYGKTRTLEISRKYAEVYlpF----EEQMLTLQH-HGKKWEVRCSVKKSKGKRLLT-GWKHFACGNNLQLGDVCLFELLRNkKKYAMNVYIIRKS 332
               5567888899******888431....223566555.**********99999999999.********************999989999999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.2E-2421119IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-2421119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.43824117IPR003340B3 DNA binding domain
CDDcd100175.21E-2425114No hitNo description
PfamPF023621.8E-1927114IPR003340B3 DNA binding domain
SMARTSM010195.5E-1627117IPR003340B3 DNA binding domain
SuperFamilySSF1019364.45E-20228332IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-21229332IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.76236332IPR003340B3 DNA binding domain
SMARTSM010194.8E-12239332IPR003340B3 DNA binding domain
CDDcd100174.72E-17241330No hitNo description
PfamPF023621.4E-15242331IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSKPWKKRKD LDEHCYWNHT DEQDKRFFKV MIGDFHERMI IPDRFVQHFR GQTGRTIKLV  60
SRHGYTFDVQ ITKNLEKLVL DSGWKAFARA HNLRTGDFLV FKYDGNSELK VLIFGPSGCE  120
KIPVCNLKKN AAPGKEWWGN SAGIVNTCHN LPMKFPHSGR QIRPSKDTLR QGNDIINVSS  180
SSSASDSAGG ISSSEDDHSL PGCILANGTL SNLNQVQKNQ LKEKIRAMNS EIPIYGCAIR  240
KSSIYGKTRT LEISRKYAEV YLPFEEQMLT LQHHGKKWEV RCSVKKSKGK RLLTGWKHFA  300
CGNNLQLGDV CLFELLRNKK KYAMNVYIIR KSLYKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162977.10.0putative B3 domain-containing protein Os03g0621600
SwissprotQ851V51e-101Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A453GI600.0A0A453GI60_AEGTS; Uncharacterized protein
TrEMBLR7WGA50.0R7WGA5_AEGTA; Putative B3 domain-containing protein
STRINGEMT199090.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-24B3 family protein