PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19562
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 299aa    MW: 32034.2 Da    PI: 6.6689
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19562genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.43.3e-10102127127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +kt+lC+ f++ GtC+y  +C+FaHg+
  EMT19562 102 FKTKLCCKFRA-GTCPYVTNCNFAHGM 127
               69*********.*************95 PP
2zf-CCCH18.53.6e-06175200126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               yk + C+ f+    C+yGd C+F H+
  EMT19562 175 YKGRHCKKFYTEEGCPYGDACTFLHD 200
               78888********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-1499134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.45E-899132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028101128IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014101127IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7102127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7173202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-9173202IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629174202IPR000571Zinc finger, CCCH-type
SMARTSM003560.3174201IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDYTNAIHII PDAAGPESWA NSAAPPGGDS GIWATEDDYS QWNGEQGLSG GGYGGDRNSS  60
QPHSRAGSEQ PPPGKKPRGS GPSGGGDAGS TSKSRAIGKM FFKTKLCCKF RAGTCPYVTN  120
CNFAHGMEEL RKPPPNWQEI VAAHEEATEQ REEHQIPIMT SSNVVPGDSV SGRAYKGRHC  180
KKFYTEEGCP YGDACTFLHD EQSKAQLHKY GGGLVDIDGR DIASTPDSKQ AAASSKLPVE  240
TAAASTAVPP HADVYHLGSQ SQRSALASQR SGQLQRPIQK WKGPDKISRI YGDWIDETD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3733070.0AK373307.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026K08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198349.11e-132zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-94C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLN1R4670.0N1R467_AEGTA; Zinc finger CCCH domain-containing protein 56
STRINGEMT195620.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.19e-59C3H family protein