PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17385
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 298aa    MW: 33633.1 Da    PI: 8.7938
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17385genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92.1e-144673198
              .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
               e+ +l+l+ +sg++W v +  +k  ++ +l++GW +F+ka++L+e+D ++F+ +g+ +f   v +f+
  EMT17385  4 SEGLDLKLKAPSGETWHVGV--SKVANELFLRSGWGGFAKAHELQENDLLLFTCTGNASF--EVLIFD 67
              567799**************..*******************************9888777..888887 PP
2B357.13.3e-18199293599
               -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS
        B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99 
               l+++   k++ l++p kfa++h ++k ++  ++ l   ++  +W v++ y  ++ r++  + W +Fv++ngL+egD++vF+l+ g  + ++++v+v r+
  EMT17385 199 LMTHLQRKNNFLTIPSKFAADHlQSK-PR--EVLLLRlSREDKWHVRC-YYSSRTRCFNCQRWVKFVRDNGLREGDVCVFELIkGArKMTTMTVHVARR 293
               55666678899***********5444.33..4555553788*******.6666667777889*******************996556778888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.21169IPR003340B3 DNA binding domain
PROSITE profilePS5086313.253169IPR003340B3 DNA binding domain
CDDcd100176.07E-14467No hitNo description
PfamPF023621.2E-11467IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-16671IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-16771IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-22186294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21187293IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-18192292No hitNo description
SMARTSM010193.3E-13194296IPR003340B3 DNA binding domain
PROSITE profilePS5086314.085195294IPR003340B3 DNA binding domain
PfamPF023629.3E-17199293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MQTSEGLDLK LKAPSGETWH VGVSKVANEL FLRSGWGGFA KAHELQENDL LLFTCTGNAS  60
FEVLIFDPSG CEKLSPLFAG RMRKHFDNMV GQGGVEQYPD SDDTRVPSQF VGSPQKASTS  120
RKCSGKTKSS KELPESPSST SCHVKLEATE EQKSDDDTCT EPGYYSSRTA SQLNEDEKQE  180
IMERASIRPG NPAFVVVLLM THLQRKNNFL TIPSKFAADH LQSKPREVLL LRLSREDKWH  240
VRCYYSSRTR CFNCQRWVKF VRDNGLREGD VCVFELIKGA RKMTTMTVHV ARRKKDGR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161789.10.0B3 domain-containing protein LOC_Os12g40090-like
RefseqXP_020161790.10.0B3 domain-containing protein LOC_Os12g40090-like
SwissprotQ2QMT51e-100Y1209_ORYSJ; B3 domain-containing protein LOC_Os12g40090
TrEMBLN1R0170.0N1R017_AEGTA; B3 domain-containing protein
STRINGEMT173850.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-23B3 family protein