PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT16686 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | GeBP | ||||||||
Protein Properties | Length: 429aa MW: 47177.1 Da PI: 9.2405 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 82 | 8.5e-26 | 23 | 115 | 9 | 97 |
DUF573 9 eeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97 +e e+++L+G+++f++++g+ +++ d+ fye +++++sf++sk+ql+eK+rrLKkK++ + ++ a++g ++f++ h+ i+++++ iW+ EMT16686 23 QEEELLILRGFLEFTSRRGTafASHQyDTGPFYEEIRRKLSFDFSKNQLIEKLRRLKKKYRVCATRmAAQGAAFAFKSVHEGAIYDVARHIWR 115 689****************99877778**************************************9889***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.3E-23 | 23 | 114 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MAVLNLPLKS KGYIKLGIKT QGQEEELLIL RGFLEFTSRR GTAFASHQYD TGPFYEEIRR 60 KLSFDFSKNQ LIEKLRRLKK KYRVCATRMA AQGAAFAFKS VHEGAIYDVA RHIWRSAFKR 120 DGVATTSTPQ KQQQSQQQAP PPRAAPRERR LAAREPAIAA FGSSVAVIAQ PPSVPAAPLP 180 PYPLTANGLT EADVRSILSP LLKELINSVA FPGQTGLGLG LGMGFGGADI LGVGLGVAGL 240 SPRVPGDEKW RQQQILELEV YLKRLELVRE QPVKEKEVRV SIHNPSTSNS TQIKRVASAP 300 YCRVDMPSRS NNKGLNLGVD WAITFLSGLG VQVQVCYKPA RLHFYAVPKF SLRSLGVAYL 360 DCLECQWACW WKSPTSGAPV LPINGALLEF AGEEEEEVTG EVLAYIAGEE EEVAGEEFTG 420 ASERRKEEP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373813 | 1e-135 | AK373813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3044F12. | |||
GenBank | AK376405 | 1e-135 | AK376405.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3123A01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566363.1 | 2e-82 | probable transcription factor At5g28040 | ||||
TrEMBL | N1R1R1 | 0.0 | N1R1R1_AEGTA; Uncharacterized protein | ||||
STRING | EMT16686 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 5e-24 | DNA-binding storekeeper protein-related transcriptional regulator |