PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT15914 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 293aa MW: 31287.9 Da PI: 6.8994 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.5 | 5.8e-28 | 120 | 180 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ g+++pr+YYrCt++ Cp++k+v+r+++dp +++++Y+g+H+++ EMT15914 120 DDGHSWRKYGQKDILGAKHPRAYYRCTHRnsqACPATKQVQRADQDPALFDVVYHGQHTCR 180 7***************************98889**************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.62 | 114 | 177 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.2E-28 | 115 | 180 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.24E-24 | 118 | 180 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-38 | 119 | 181 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.9E-27 | 120 | 180 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 293 aa Download sequence Send to blast |
MESVEGNGTG RGNLQLVVSE LCRVQELVRQ LELHLHAPDV SIDLCRALTA EIFALTDRSI 60 GFVAAAHFPD APTTPSSTSS SLSGVSDQPF RTNTKKRKAT ARWTSQVRVS AAGGAEGPGD 120 DGHSWRKYGQ KDILGAKHPR AYYRCTHRNS QACPATKQVQ RADQDPALFD VVYHGQHTCR 180 PTGGRRPPTN QHNPHAESLL QSLRAGLTVD AEHGALNNTS VSPPSMASPV ASGSNGGLAM 240 SPYPVPAGAY AEWPLDGDLQ EVVSALTAVS APSMDCLFEF DPTFGVGVPN FFM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-24 | 120 | 180 | 9 | 69 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX028549 | 0.0 | JX028549.1 Triticum aestivum transcription factor WRKY mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187901.1 | 0.0 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A453B1M6 | 0.0 | A0A453B1M6_AEGTS; Uncharacterized protein | ||||
STRING | EMT15914 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G11070.2 | 1e-37 | WRKY family protein |