PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT15468 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 439aa MW: 46669.2 Da PI: 4.5059 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.8 | 3e-25 | 54 | 197 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek..ewyfFskrdkkyatgkrknratk..sgyWk.atgkdkevlsk. 95 ppGfrF Pt++e++ +yL +k++g+ +++i e +y+++P L k ++ ++ + yf s+r++ky++g r++r tk g+Wk +tgk+ e EMT15468 54 PPGFRFMPTEDEMIRYYLLPKLQGRAYVPNNAIIEDSVYQCHPDGLTsKYMDRGQAgrSFYFLSPRERKYKNGVRPRRDTKdrLGRWKaSTGKTDERGGGd 154 89************************7777889999**********955554443333779*****************887557****5578866544334 PP NAM 96 .........kgelvglkktLvfy..kgrapkgektdWvmheyr 127 +g+++ +k L+++ +gr +k +k+ W+m+e + EMT15468 155 vrkeervagDGTTKYCKSGLAYFyfRGRGEKEKKSGWLMQELT 197 44446666666669******9877899*************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-27 | 50 | 225 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.787 | 53 | 227 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-13 | 54 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MAAEEGDGEE DKAIVVGAGD TAEEEIVAGA DEEEEMHGGW DGGGGGGDGM FRPPPGFRFM 60 PTEDEMIRYY LLPKLQGRAY VPNNAIIEDS VYQCHPDGLT SKYMDRGQAG RSFYFLSPRE 120 RKYKNGVRPR RDTKDRLGRW KASTGKTDER GGGDVRKEER VAGDGTTKYC KSGLAYFYFR 180 GRGEKEKKSG WLMQELTVPE YEIKLPEKGG PGGPTLDRYV MYKIYPAPVG RKKRNNDDEA 240 GPSNAEAAES DDEGETAELP PMLSDKQAGK RPKQPETDEM LEKRVLEQKP GGIPLDAAAA 300 AAAADGVDDA PAAAMDDGVH DAAAADFGGS NADCNPDAGG KAPQFSLDDF YASQAAEHYR 360 RSRAVLPATS GSPGEAAPVK ADGSPDSTVV SAVGSGDGNN ANHDRAESAA VKASPGGSAS 420 AEDEITPNMV GLGDRCSIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-13 | 54 | 198 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | N1R0H2 | 0.0 | N1R0H2_AEGTA; NAC domain-containing protein 29 | ||||
STRING | EMT15468 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14361 | 20 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03200.1 | 3e-13 | NAC domain containing protein 45 |