PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT13220
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 336aa    MW: 37292.5 Da    PI: 9.0176
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT13220genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.4e-18271111599
               -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                + +p kf+++h   +++ +  tl+++ g+ W v +  ++++g   +++++GW eFv+an+L+e  f+vFk++g++ f  +vkvf++
  EMT13220  27 KMPIPAKFMRRHLAAEPGLRRATLMSPLGKFWHVDVVRDGHGGDsdVYFAGGWAEFVRANRLEEENFLVFKYEGNMVF--TVKVFET 111
               378*********666678889***************8866666677********************************..9999986 PP
2B348.61.4e-152633352199
               HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3  21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
               kf+  +g+ +  ++ ++l+d+ grsW vkl  + +s++  +++GW +F   +g+k+gD +vF+l+++++f  +v+++r+
  EMT13220 263 KFCVMNGIAT--NRLMILKDSGGRSWPVKL--TLTSDQARMKAGWGHFSGHHGIKVGDLCVFHLVDEHTF--NVSIRRA 335
               7888888774..558***************..99999999************************998888..9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.74713112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-2213114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-2213114IPR015300DNA-binding pseudobarrel domain
CDDcd100173.60E-2014109No hitNo description
SMARTSM010198.0E-1416112IPR003340B3 DNA binding domain
PfamPF023629.3E-1627111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-17222335IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-6244336IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-17262335IPR015300DNA-binding pseudobarrel domain
PfamPF023629.0E-13263335IPR003340B3 DNA binding domain
CDDcd100172.89E-13263334No hitNo description
PROSITE profilePS5086312.492276336IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MASDSNRKAP CGKPQFLKVL FTDFMEKMPI PAKFMRRHLA AEPGLRRATL MSPLGKFWHV  60
DVVRDGHGGD SDVYFAGGWA EFVRANRLEE ENFLVFKYEG NMVFTVKVFE TSGCIKNYDD  120
LVVAGALLEQ AAPRKRSSTG CGSQPTSKGH GGSHAQKTRK VSDRSLTGDG AIQAKKQYKP  180
RRILMEDNDG EQDATTEKYA QADTHSGIAT EAKESDYTGT LPFYAKTATP CNIRYSYMAS  240
SLACSKSNIY SLVQIDMHCE LIKFCVMNGI ATNRLMILKD SGGRSWPVKL TLTSDQARMK  300
AGWGHFSGHH GIKVGDLCVF HLVDEHTFNV SIRRAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194046.10.0B3 domain-containing protein At3g18960-like
TrEMBLR7W6700.0R7W670_AEGTA; Putative B3 domain-containing protein
STRINGEMT132200.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-13B3 family protein