PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT11324 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | WRKY | ||||||||
Protein Properties | Length: 223aa MW: 23917.5 Da PI: 6.3547 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.9 | 4.2e-28 | 129 | 186 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +dDg++WrKYG+K vk+s++ r+YYrC+ +gC vkk+ver+++dp +v +tY g Hnh EMT11324 129 MDDGFRWRKYGKKAVKSSPNLRNYYRCSAEGCGVKKRVERDRDDPLYVLTTYDGVHNH 186 59******************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-29 | 117 | 188 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.29E-26 | 121 | 189 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.954 | 124 | 189 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-32 | 129 | 188 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-22 | 130 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MAASLGLTTS HEAYYSAHPA ASSLYNFEAG DPFVAAADGA AELSFPELVE AARASDYSPL 60 PAFGAAGGET MNMYGRSVVF PMTASYYCDG AWMFEDDAAA RARGGGIGAM AGRPSGRIGF 120 RTRSEVEVMD DGFRWRKYGK KAVKSSPNLR NYYRCSAEGC GVKKRVERDR DDPLYVLTTY 180 DGVHNHVTPG STSSRAAPAY SAPTAPAWTW SELQAAAHSS ESY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-25 | 115 | 189 | 3 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-25 | 115 | 189 | 3 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ700327 | 0.0 | HQ700327.1 Triticum aestivum WRKY10 transcription factor (WRKY10) mRNA, complete cds. | |||
GenBank | KJ830758 | 0.0 | KJ830758.1 Triticum aestivum WRKY10 transcription factor (WRKY10) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188165.1 | 1e-163 | WRKY transcription factor WRKY24-like | ||||
TrEMBL | A0A3B6GSH0 | 1e-161 | A0A3B6GSH0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453E795 | 1e-161 | A0A453E795_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8BWY8 | 1e-161 | M8BWY8_AEGTA; Putative WRKY transcription factor 50 | ||||
STRING | EMT11324 | 1e-162 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 3e-38 | WRKY DNA-binding protein 50 |