PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09781
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 306aa    MW: 34721.4 Da    PI: 6.9967
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09781genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.53.3e-206861399
              TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
              ++r+++p kf++++ g+   ++t++le+++g++++v +  +    ++vl++GW+ Fv+a+g+  gDf+vF +dg+s f  +v +f+ 
  EMT09781  6 RDRMTIPDKFVQKFRGQ--ITRTVKLESRNGNTFDVHV--TEDLHKVVLQSGWEVFVSAHGISMGDFLVFNYDGNSWF--KVLIFDP 86
              689***********888..5669***************..999999********************************..9999885 PP
2B350.73.2e-162223051299
               HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
               + ++l l+ k+a+e+   ++e++tl+l +++ +sW+v++ ++k+  + +++ GW eF+++n+Lk+gD ++F+  +++++ ++v+++rk
  EMT09781 222 SPCILDLSSKYADEYL--PREDQTLML-QRRDKSWKVQFHINKNNTKRLFQ-GWGEFADDNNLKVGDLCLFEPLQKKNRVMNVHIIRK 305
               55889999****9995..335556775.5699*******888887777777.********************888899999***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.493187IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-20489IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-17585No hitNo description
SuperFamilySSF1019362.55E-20589IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-4587IPR003340B3 DNA binding domain
PfamPF023629.7E-18685IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-19203305IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-21203305IPR015300DNA-binding pseudobarrel domain
CDDcd100176.09E-17208304No hitNo description
PROSITE profilePS5086312.266211306IPR003340B3 DNA binding domain
SMARTSM010193.2E-11214306IPR003340B3 DNA binding domain
PfamPF023623.5E-14225305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MIGDFRDRMT IPDKFVQKFR GQITRTVKLE SRNGNTFDVH VTEDLHKVVL QSGWEVFVSA  60
HGISMGDFLV FNYDGNSWFK VLIFDPSGCE RLSSSCLPMK TAPHDGQECG EKLTGTLSMR  120
HDLPMMGSPQ SERGTMIQWD NSNHVENSIV LGSSSAPSSD SSGDGLSLED NQELSFVPSP  180
ILRNRANLTD IQERKMNEKV DAIHSKIPIY GTVMTKCNIF GSPCILDLSS KYADEYLPRE  240
DQTLMLQRRD KSWKVQFHIN KNNTKRLFQG WGEFADDNNL KVGDLCLFEP LQKKNRVMNV  300
HIIRKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3B6JGR80.0A0A3B6JGR8_WHEAT; Uncharacterized protein
TrEMBLM8B7460.0M8B746_AEGTA; Putative B3 domain-containing protein
STRINGEMT097810.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-20B3 family protein