PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09780
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 352aa    MW: 39407.8 Da    PI: 9.266
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09780genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567e-18371181098
               HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ++++ ++lp +fa++++g    s  + l+ ++g+sW++k+   +  +++vl++GWkeFv+ +g+ egD ++Fk++g s+f   v +f+
  EMT09780  37 DFTES-MSLPGRFAKNFNGH--ISEVINLKPPTGKSWSIKV--AGDTDEVVLRSGWKEFVDGHGIGEGDRLLFKYSGASSF--DVLMFD 118
               44444.9*******888666..6779***************..*********************************99999..777776 PP
2B337.15.7e-122593431499
               T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
        B3  14 grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
               +++ ++ +fa ++ g    +++++l+   +   W v++i  +  +r + ++GW++F++ ngL + D+++F+++++ ++   +v+v+r+
  EMT09780 259 SIVGVSSEFAGKYLGA--IGREIVLRRaGRKGGWHVRYIS-GDNCRGFCGRGWRDFARHNGLLAHDICIFEFMEDaRRPAANVHVLRR 343
               5566788999999444..566899999556689*****76.4444556899********************99887877788888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-2224122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-2325127IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.4827120IPR003340B3 DNA binding domain
CDDcd100175.29E-1828118No hitNo description
SMARTSM010191.1E-830120IPR003340B3 DNA binding domain
PfamPF023622.2E-1531116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-16237342IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-15237341IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-12241342No hitNo description
PROSITE profilePS5086310.151246344IPR003340B3 DNA binding domain
SMARTSM010190.0017247344IPR003340B3 DNA binding domain
PfamPF023627.8E-10262343IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MQKMGKNCER CAEWQEHCYW SHMADEKKHF FKLMVGDFTE SMSLPGRFAK NFNGHISEVI  60
NLKPPTGKSW SIKVAGDTDE VVLRSGWKEF VDGHGIGEGD RLLFKYSGAS SFDVLMFDST  120
GCQKPPPPRP VKRRGCDDDI TENSARAKGR RCGYQASNKT EERAPHPPPA AKGDGAGLEL  180
TLYRGTGKSI ARAGLEMDHG EAAAKNRYYF CKNGPVSEFH LTEEDKEEIS SIPVPVEPRN  240
PVFVNVMHVS HVRGTTRTSI VGVSSEFAGK YLGAIGREIV LRRAGRKGGW HVRYISGDNC  300
RGFCGRGWRD FARHNGLLAH DICIFEFMED ARRPAANVHV LRRLHGRFVL VR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133RPVKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189910.10.0B3 domain-containing protein Os03g0622200-like
SwissprotQ10GM31e-120Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLA0A453HCW90.0A0A453HCW9_AEGTS; Uncharacterized protein
TrEMBLM8B8370.0M8B837_AEGTA; B3 domain-containing protein
STRINGEMT097800.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-27B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]