PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09491
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 294aa    MW: 31190.8 Da    PI: 5.3965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09491genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.82e-082132531055
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               ++RR++i  ++ +L+el+P+      +K++ +++LekA  Y+k Lq
  EMT09491 213 KNRREKISARLRTLQELVPNG-----TKVDMVTMLEKAFSYVKFLQ 253
               9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.999203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-11208261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-12208265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-10209257No hitNo description
SMARTSM003532.5E-9209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-6213253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MALVREPMLM YDGGFDAEAS AFDGLGYGGH DALLGGVDAA ALWGYAYAQD EPAGAASAYV  60
RDSASWASAG PSVLSFRHGA RGHAAQQEVV EEEPDCDAWV DDMDVDQGHQ HAAPALTIGF  120
DPATGCFSLT QSSVGARRPF GLLFPSTSNG SPDAAAPARG SSKRSYAARV QDQDAEPRAT  180
KKPCDASRKT SKAKPAAPTT TSPKGDPQSL TAKNRREKIS ARLRTLQELV PNGTKVDMVT  240
MLEKAFSYVK FLQLQVKVLA MDEFWPAQGG TAPEISQVKE ALDAILSSQR GQLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3728840.0AK372884.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3015A08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155972.10.0putative transcription factor bHLH086
TrEMBLM8B6700.0M8B670_AEGTA; Putative transcription factor bHLH086
STRINGEMT094910.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-44ROOT HAIR DEFECTIVE6