PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT02729 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | GRF | ||||||||
Protein Properties | Length: 469aa MW: 50564.3 Da PI: 7.4786 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.2 | 6.8e-24 | 79 | 122 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e EMT02729 79 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 122 69***************************************986 PP | |||||||
2 | QLQ | 61.5 | 2.3e-21 | 12 | 48 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKyLaan vP++L+++i++ EMT02729 12 GPFTPSQWMELEHQALIYKYLAANIAVPHNLVVPIRR 48 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.1E-12 | 12 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.1E-15 | 13 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.983 | 13 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.65 | 78 | 122 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.7E-20 | 80 | 121 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MDRKKGLSSV RGPFTPSQWM ELEHQALIYK YLAANIAVPH NLVVPIRRSV TSLYPSAYFG 60 SSTLGWGPFQ LGYSGSADLE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN RGRHRSRKHV 120 EGQPGHAAKA MPATAAAAAQ PGALATGGGG GAPAGAAICH EQQPLKNYAA STIDPCSLQY 180 NREMVSKQQH ECEQVQDSDT LSMLTSMSAR NTNAGSMFPF SKEHHNHNPF EVTSSRPDYG 240 LVSSDSLMSS PHSSLENVNL LTSQRALSSE QQSSLSLQHF ADWPRTPSQQ GQGGGLSWPD 300 AEDMQAHQRT QLSVSAVPMA SSDLSSASTS PIHEKLMLSP LKLSREYSPI GLSVAATAAV 360 AKDEGEANWM PMFRDSSMGG PLGEALNKNN GGNMEAKSYL SASLNLMTDA WDSSPLESSP 420 VGVLQRTAFG SVSSSTGSSP RQEYHGVYDG NPRDDLGSIV VNHPSIRLM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376067 | 0.0 | AK376067.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3113P04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187288.1 | 0.0 | growth-regulating factor 6-like | ||||
Swissprot | Q6AWY3 | 0.0 | GRF6_ORYSJ; Growth-regulating factor 6 | ||||
TrEMBL | R7W095 | 0.0 | R7W095_AEGTA; Uncharacterized protein | ||||
STRING | EMT02729 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4290 | 35 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-46 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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