PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT01357
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 392aa    MW: 44061.1 Da    PI: 8.256
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT01357genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.7e-061435426
              ---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
              +lC+ff+  G C  G+ C F+H+
  EMT01357 14 VLCKFFMH-GACLKGEYCEFSHD 35
              79**8888.*************5 PP
2zf-CCCH27.94.1e-094363526
              --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
               C f++r G C+yG+rC++ H+
  EMT01357 43 VCTFYQR-GSCSYGNRCRYDHV 63
              5999999.*************7 PP
3zf-CCCH21.73.5e-07174196326
               S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
               +++C+ fa++G C+yG+ C+ +Hg
  EMT01357 174 MPICS-FAAGGNCPYGEECPHMHG 196
               68999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5911037IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-71135IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-51136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2673865IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-44064IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-54062IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-64363IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-44362IPR000571Zinc finger, CCCH-type
SMARTSM003560.015171197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.76171198IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4174196IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.3E-12229304No hitNo description
Gene3DG3DSA:3.30.40.101.1E-9233299IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001628.06E-4239299No hitNo description
PfamPF136393.8E-7239298IPR001841Zinc finger, RING-type
SMARTSM001842.9E-7240297IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.297240298IPR001841Zinc finger, RING-type
PROSITE patternPS005180264273IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.01327355IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648327356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016874Molecular Functionligase activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MFLRGRGAHG SNKVLCKFFM HGACLKGEYC EFSHDWSDQA NNVCTFYQRG SCSYGNRCRY  60
DHVKVSRNNP VPPLPSSSTA TRNSPVRLPP SSSTATHVAS TSPQLLSSGR PLHLGHQTNS  120
SNQRQQISMD KLAVSESKPA WRNEVQLDSV SEDGIGWSSI QTAQNQTSMK LADMPICSFA  180
AGGNCPYGEE CPHMHGDLCA FCGKMCLHPY RPDERQEHIK LCEKNHKRLE ALKRSQEIEC  240
SVCLDRVLSK PTAAERKFGL LSECDHPFCI SCIRNWRGNS PTSGMDVNSA LRACPICRKL  300
SYYVIPSVLW YFSKEEKLEI TENYKAKLKS IDCKYFDFGT GTCPFGTSCF YKHAYRDGRL  360
EEVVLRHLDC DDGSTLIAKN IRLSDFLGRL HL
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2481880.0AK248188.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156g01, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148371.10.0E3 ubiquitin-protein ligase makorin-like isoform X3
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLR7W2E70.0R7W2E7_AEGTA; E3 ubiquitin-protein ligase makorin
STRINGEMT013570.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-144C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]