PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0387s00007.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family MYB_related
Protein Properties Length: 826aa    MW: 94170.1 Da    PI: 8.9956
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0387s00007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.4e-11770817247
                           SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                           g WT++ ++ lv a kq+G++   +W+++a+t++ g++  +c  r+  +
  Dusal.0387s00007.1.p 770 GQWTEDQELALVAALKQYGKElsdRWDRVAETVP-GKSKVECFKRFKEL 817
                           89********************************.*******9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.2E-20111202IPR001623DnaJ domain
SuperFamilySSF465654.06E-20111187IPR001623DnaJ domain
SMARTSM002711.4E-17115183IPR001623DnaJ domain
PfamPF002263.3E-18116188IPR001623DnaJ domain
CDDcd062575.13E-13116180IPR001623DnaJ domain
PROSITE profilePS5007617.893116191IPR001623DnaJ domain
PRINTSPR006253.1E-6121139IPR001623DnaJ domain
PRINTSPR006253.1E-6139154IPR001623DnaJ domain
PRINTSPR006253.1E-6163183IPR001623DnaJ domain
PROSITE patternPS006360168187IPR018253DnaJ domain, conserved site
PROSITE profilePS512937.267520573IPR017884SANT domain
SMARTSM007171.8E-6521573IPR001005SANT/Myb domain
SuperFamilySSF466893.36E-7524565IPR009057Homeodomain-like
CDDcd001671.81E-4524564No hitNo description
PROSITE profilePS500908.571764818IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.0E-6767817IPR009057Homeodomain-like
SMARTSM007173.5E-8768820IPR001005SANT/Myb domain
SuperFamilySSF466893.66E-10769817IPR009057Homeodomain-like
PfamPF002491.1E-8769817IPR001005SANT/Myb domain
CDDcd001679.55E-7772817No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MCTHLPVRKK GGVRLLGWPA ESTETVVVSS AAGPLSIGHK EPAGHLFHTA ILKQHGLFQY  60
PPEEDEEDKG SNKSGSSGGD KQEKSTGAGL DDQPPPGVNW KGSKKKKTKG KKEGQDLYLL  120
LGLQNERFMA TDNQIKNAYR RACLEHHPDK KLTQSESPEE KQRVEDHFKL IQEAHSVLSD  180
PAKRREYDST DHFDDSLPLE CDPADFFKVF GPAFRRNARW SVDPKVPDVG DEKTPYDQVE  240
KFYNFWFGFK SWREFPHPDE EDTEGCESRE HKRWLDRQNA KLREKGKKEE SKRLKEFINA  300
AYSMDPRVIQ KKENDRLERE RKKQAKEDAK RRAVEEAEAK VAAENAARQA AEEAEKKRNA  360
EAKAVREAEK NTYKKERQRL RRLCDGHGQR GAHACCLVIR TWPTWSTCML FVDQGMASVE  420
RMHAAWRSGH GQLGAYARYR RRLLAHCAGV ACLSERLGMQ SNLSGRHATP TRGVPAVFAY  480
KLCRSSEVLL LEIRTLQFVQ YWEHALVSAE AEREHQRKME SMREWSDEEL RMLDKAVAKF  540
PQGTPKRWEV VAAYVRTRSL EEVVFMVKEK QGMTAGRLKA QEDFRANMKR KAEVKSEADL  600
RINAFTDLNI SLAGDAASRL NESTLVKSAG EANGEEQGPG AGPDSEQTAA AAEQQQEQEQ  660
QQQQQQQQQQ DQQQQQQKQQ QQQKQQQQQK QQQEQKQQQE QQQRQHQQEQ EEQQKQKQQQ  720
EQQQQQKQQQ ESRAAAASQE AKANGSGGGK SGAAPEKKGN AVVATSAETG QWTEDQELAL  780
VAALKQYGKE LSDRWDRVAE TVPGKSKVEC FKRFKELREM FGKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A8e-1620530820123Zuotin
5dje_B8e-1620530820123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002953749.11e-123asymmetric division protein GlsA
TrEMBLA0A383VE961e-129A0A383VE96_TETOB; Uncharacterized protein
STRINGXP_002953749.11e-122(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP118489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-74DnaJ domain ;Myb-like DNA-binding domain