PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029206.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 292aa    MW: 30961 Da    PI: 9.8536
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029206.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-171964147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed ll ++v+q+G ++W++I++ ++ gR++k+c++rw + 
       Do029206.1 19 KGSWSPDEDALLTRLVEQHGAHRWSLISAAIP-GRSGKSCRLRWCNQ 64
                     799*****************************.***********985 PP
2Myb_DNA-binding56.56.4e-1873115347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++Tt Ed l++ a++++G++ W+tIar ++ gRt++++k++w++ 
       Do029206.1  73 PFTTHEDALILTAHARHGNK-WATIARLLP-GRTDNSIKNHWNSN 115
                      89******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.0041469IPR017930Myb domain
SuperFamilySSF466891.16E-3017112IPR009057Homeodomain-like
SMARTSM007171.8E-161867IPR001005SANT/Myb domain
PfamPF002494.5E-171964IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-242072IPR009057Homeodomain-like
CDDcd001675.29E-152163No hitNo description
SMARTSM007171.1E-1470118IPR001005SANT/Myb domain
PROSITE profilePS5129418.19670120IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2273118IPR009057Homeodomain-like
PfamPF002499.9E-1573115IPR001005SANT/Myb domain
CDDcd001673.42E-1273116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEPAPPPGVV AAAAAEMKKG SWSPDEDALL TRLVEQHGAH RWSLISAAIP GRSGKSCRLR  60
WCNQLSPDVH HRPFTTHEDA LILTAHARHG NKWATIARLL PGRTDNSIKN HWNSNLRRCR  120
RRAAAAAAAA AAAASTASTS RAAGPQLQRI NLQQDSSGAP AAADQPPSAD QQRQCVMMMM  180
MRRSHDDGSS SSATPPAPSA ADPPTSLSLS LGLPLPAEPE AVAGDDQAAA KALLPVAGMK  240
GADDQPSPLP QAVNPQLVAL VRQMVREEVQ RQTGQLAYSL MATAAWDKGQ HR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-35161181103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029206.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432281e-152AC243228.1 Panicum virgatum clone PV_ABa011-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681066.13e-93transcription factor CSA-like
TrEMBLA0A1E5W4H00.0A0A1E5W4H0_9POAL; Transcription factor MYB44
STRINGSi022959m1e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135442731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-48myb domain protein 73