PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029152.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 522aa    MW: 56546.7 Da    PI: 5.2925
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029152.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.31.1e-47131431128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                 lp+GfrF+Ptdeelv +yLk+k++g  ++    i++vd+  +ePwdLp k  +++++ ew+fF++ d+ky+ g+r+nr+t++gyWkatgkd+ + s+  
  Do029152.1  13 LPVGFRFRPTDEELVRHYLKPKIAGAAHPDLLLIPDVDLSACEPWDLPaKaLIRSDDPEWFFFAPLDRKYPGGHRSNRSTTAGYWKATGKDRLIRSRpA 111
                 79*************************999888***************5346667888**************************************989 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                 g+l+g+kktLvf++grap+g++t W+mheyr 
  Do029152.1 112 GTLIGVKKTLVFHRGRAPRGHRTAWIMHEYRT 143
                 999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-5412164IPR003441NAC domain
PROSITE profilePS5100554.57913164IPR003441NAC domain
PfamPF023652.2E-2614142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MPSPPPPPPP GALPVGFRFR PTDEELVRHY LKPKIAGAAH PDLLLIPDVD LSACEPWDLP  60
AKALIRSDDP EWFFFAPLDR KYPGGHRSNR STTAGYWKAT GKDRLIRSRP AGTLIGVKKT  120
LVFHRGRAPR GHRTAWIMHE YRTAEPQLQQ VQNGSFVLYR LFNKHEEEPE ASDASPSTSS  180
PAGPRPITPA VKAEDLIQPA SAKTAHLLLT TPSNNEPTAA QEESDPLLDV LAQLPDLQHE  240
QTYDGFPTIT SPTRPYTDHP FLGNVGGQDL SAYIDSIIAH QDLEDLLVSP SLAETVEHST  300
GNVKPNPTAL LIPSSSSSNN KRSPENSWPN VDSERLLLIQ GADGTGAAAC YSSATKTLQI  360
DTGDANHDTG AQTNSTSSVS AQASHLYNQY QLQSAFIPET EPPNSGALCS AGSCNPCPQH  420
LFNNMVEPAR SDMADSDAFN GLEGRVEPSM QQFTVSNFME PHQGTAARRI RLVHSIQRAT  480
VAEPVLTSNL EGEDEAGSCY STGSSSTNNN KDYANVISQT IV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-421216519169NAC domain-containing protein 19
3swm_B6e-421216519169NAC domain-containing protein 19
3swm_C6e-421216519169NAC domain-containing protein 19
3swm_D6e-421216519169NAC domain-containing protein 19
3swp_A6e-421216519169NAC domain-containing protein 19
3swp_B6e-421216519169NAC domain-containing protein 19
3swp_C6e-421216519169NAC domain-containing protein 19
3swp_D6e-421216519169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029152.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813332.10.0uncharacterized protein LOC112890695
TrEMBLA0A1E5USQ90.0A0A1E5USQ9_9POAL; Protein NTM1-like 9
STRINGSi006105m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.21e-64NAC transcription factor-like 9