PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do029074.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Protein Properties

Length: 288aa MW: 32709.8 Da PI: 10.0727

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do029074.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.5	3.7e-16	2	75	19	99
-HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 p k a ++ gk +++e++sg +++v++ k+ gr l++GW+ Fv+a++Lk Df+vFk+dg+s+ +v +f+ Do029074.1 2 PDKLALHFRGKI---ASIKVESRSGHTFDVQV--AKNLGRLALQSGWEAFVSAHDLKMLDFLVFKYDGTSRM--KVLIFDP 75 666665554443...359************..******************************985555..9999885 PP
2	B3	44.9	2.1e-14	218	285	32	97
--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 32 esktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++t + +++g+sWev +++ r++++ l+kGWk+F+++n+L+ gD ++F+l ++++ ++v+v+ Do029074.1 218 KERT-LMLHRHGKSWEVLCRVqvqRGQRNFKRLSKGWKGFARDNNLQLGDLCLFELLKTKKYMMNVHVV 285 3334.45778*******9976666666699*********************99988888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	0.062	1	76	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.139	1	76	IPR003340	B3 DNA binding domain
CDD	cd10017	4.38E-14	1	74	No hit	No description
Pfam	PF02362	2.0E-13	2	74	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.39E-14	10	83	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.0E-18	10	88	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-17	185	285	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.39E-16	185	285	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.22E-13	188	284	No hit	No description
SMART	SM01019	0.0052	190	288	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.0E-12	219	284	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.744	223	288	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
LPDKLALHFR GKIASIKVES RSGHTFDVQV AKNLGRLALQ SGWEAFVSAH DLKMLDFLVF 60 KYDGTSRMKV LIFDPSGCEK VPPCFVAENN ISGRQRKEES IDISSNYANL PMETPETKKK 120 GGKQRDGSNI MNISLLSLPS ESSGGSMSSE EHEAHSVPSY ILPKRTSLTD VQKKKLKEKV 180 RAICSEIPIY GRVMKNTDIS GKRTDFCVEY GDAYLPFKER TLMLHRHGKS WEVLCRVQVQ 240 RGQRNFKRLS KGWKGFARDN NLQLGDLCLF ELLKTKKYMM NVHVVHEK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do029074.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022679253.1	1e-152	putative B3 domain-containing protein Os03g0621600 isoform X1
Swissprot	Q851V5	1e-86	Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBL	A0A1E5UZ36	0.0	A0A1E5UZ36_9POAL; Putative B3 domain-containing protein (Fragment)
STRING	Si038567m	1e-150	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2901	29	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-11	B3 family protein