PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do028107.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 187aa MW: 21455 Da PI: 10.1487 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.9 | 9.8e-12 | 21 | 60 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n++ r+ t+ +R + + KK + L +LC+++++v++f++ Do028107.1 21 IVNNTARHATYKRRYKSLTKKTSDLATLCGIKACVVVFGE 60 7799**********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.6E-11 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.722 | 11 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.65E-18 | 12 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.29E-16 | 12 | 83 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-12 | 21 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
LCFLRKHARP IARKKVHLQW IVNNTARHAT YKRRYKSLTK KTSDLATLCG IKACVVVFGE 60 GETQPVVWPS KLEAKRVLKK SKAMPDKFKQ MQNQEDFLHS RISMLQDQVC KLNHYNRELE 120 TADLLHESIY GQCAVLDTAT MEALNNLRWM VYTKTMEAKE RLRELVGEGS LPKLQTSPAS 180 PPQPSCT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do028107.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971693.1 | 7e-58 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1E5VMY9 | 1e-138 | A0A1E5VMY9_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | Pavir.Eb00487.1.p | 2e-59 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 5e-24 | AGAMOUS-like 80 |