PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024579.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 292aa    MW: 32876.4 Da    PI: 6.0538
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024579.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.31.5e-211483170
    trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
                +W++ e+ a +++r e+++++ ++k++k+lWe+vs++++ +gf r+p qCk+kw+nl +ryk +++ + +
  Do024579.1 14 QWSHAETAAFLAVRAELDHSFLTTKRNKALWEAVSARLQGQGFARTPDQCKSKWKNLVTRYKGTEAAAAS 83
                7**************************************************************9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00471173IPR001005SANT/Myb domain
CDDcd122031.40E-191378No hitNo description
Gene3DG3DSA:1.10.10.602.0E-41473IPR009057Homeodomain-like
PfamPF138376.8E-171480No hitNo description
PROSITE profilePS500907.6541571IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
LQPSASLERE RLPQWSHAET AAFLAVRAEL DHSFLTTKRN KALWEAVSAR LQGQGFARTP  60
DQCKSKWKNL VTRYKGTEAA AASAHPAPDA DPAAAAQQQA RQFPFHEEVR RIFDARVERA  120
QALERKRAKG KGVRHEDDEG CGGEGEDDDD EEEELEAEMG EDEAGSRVAA EARGGGGGAK  180
KRRRKQAAAA AAAAARVRSA DQGEVEAMLR EFMRRQVEME ERWMEAAEAR EAERRAREEE  240
WRNAMVALGE ERLALVRRWR DREEAWRTRA EEREERRHQL VAALLAKLGG DS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184KKRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024579.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1305981e-97AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence.
GenBankAP0149611e-97AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-97CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8363561e-97CT836356.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051H02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680762.11e-106trihelix transcription factor GT-3b-like
TrEMBLA0A1E5VDP90.0A0A1E5VDP9_9POAL; Trihelix transcription factor GT-3a (Fragment)
STRINGPavir.Ca00737.1.p4e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.15e-30Trihelix family protein