PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do023024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 220aa MW: 24003.1 Da PI: 7.0214 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.5 | 1e-12 | 61 | 106 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RRdr+N +f eLr +P+ +++ a+ L A+ YI +L Do023024.1 61 SHVEAERQRRDRLNRRFCELRAAVPTV-----SRMDRASLLSDATAYIAEL 106 899***********************6.....49**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.059 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-15 | 60 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-16 | 61 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-10 | 61 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-11 | 63 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSCEVPEQWL VAGDVLDKRD DDDEPLDDGA DNSPSPPEPH AERKSRRGRK PGPRTAGPAS 60 SHVEAERQRR DRLNRRFCEL RAAVPTVSRM DRASLLSDAT AYIAELRGRV KELETEAKTR 120 RMTGAEASQS PQHFSLEVRM VGRDAASLRL TTPAARHAQA PACLMAAIRA LDLLVQNACV 180 CRVGGPTVQD VVVDVPAAGG LLGEDYLRAA LLHRLLQESV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-18 | 61 | 116 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 4e-18 | 61 | 116 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 4e-18 | 61 | 116 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 4e-18 | 61 | 116 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 4e-18 | 61 | 116 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 4e-18 | 61 | 116 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 4e-18 | 61 | 116 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 4e-18 | 61 | 116 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 71 | RQRRDR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do023024.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444643.1 | 2e-70 | transcription factor bHLH14 | ||||
TrEMBL | A0A1E5UYG1 | 1e-156 | A0A1E5UYG1_9POAL; Uncharacterized protein | ||||
STRING | Sb07g025310.1 | 8e-70 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 6e-26 | bHLH family protein |