PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020641.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 364aa    MW: 41244.6 Da    PI: 7.7811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020641.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.3e-06123326
                S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                ++lC+ff+  G C  G+ C F+H+
  Do020641.1  1 RVLCKFFMH-GACLKGEYCEFSHD 23
                689**8888.*************5 PP
2zf-CCCH28.42.7e-093151526
                --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                 C f+++ G C+yG+rC++ H+
  Do020641.1 31 VCTFYQK-GACSYGSRCRYDHV 51
                5******.*************7 PP
3zf-CCCH19.41.9e-06147168426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 ++C+ fa+ G C+yG+ C+ +Hg
  Do020641.1 147 PICS-FAAAGNCPYGEGCPQMHG 168
                 6788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.934125IPR000571Zinc finger, CCCH-type
SMARTSM003560.033124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2772653IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-42852IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-52850IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-43150IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-73151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.652143170IPR000571Zinc finger, CCCH-type
SMARTSM003560.011144169IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.11E-11201276No hitNo description
Gene3DG3DSA:3.30.40.104.6E-10205271IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00146211271No hitNo description
PROSITE profilePS5008912.224212270IPR001841Zinc finger, RING-type
PfamPF000972.4E-7212269IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001842.8E-7212269IPR001841Zinc finger, RING-type
PROSITE patternPS005180236245IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.676299328IPR000571Zinc finger, CCCH-type
SMARTSM003560.011299327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
RVLCKFFMHG ACLKGEYCEF SHDWKDQANN VCTFYQKGAC SYGSRCRYDH VKVSRNPTVP  60
PPPPSSSTAR LASTSHQRLS SSHPPHTGHQ TDSSDQRNHI SVDELAHLTS MPAWRNDFQH  120
VVSEDVIDWS SNQTLQNQTS LRPTDLPICS FAAAGNCPYG EGCPQMHGDL CTTCGKLCLH  180
PYRPDERGEH IKLCEKNHKR LEALKRSQEI ECSVCLDRVL SKPTAAERKF GLLSECDHPF  240
CIACIRNWRS NSPASGMDVN SALRACPICR KLSYYVIPSV LWYFSKEEKE EITESYKSKL  300
KSIDCKYFDF GTGSCPFGTS CFYRHAYRDG RLEEVILRHL DADDGSTVIA KNIRLSDFLS  360
RMHL
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020641.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656290.0BT065629.1 Zea mays full-length cDNA clone ZM_BFb0371O01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965338.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A1E5VCM60.0A0A1E5VCM6_9POAL; E3 ubiquitin-protein ligase makorin (Fragment)
STRINGSi006712m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-147C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]