PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019658.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 421aa    MW: 44313.9 Da    PI: 9.2446
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019658.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001244266123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC+ CgksFs+   L  H  +H
  Do019658.1 244 FKCSVCGKSFSSYQALGGHKTSH 266
                 89**********99998888777 PP
2zf-C2H211.80.00076318340123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k F++   L  H r+H
  Do019658.1 318 HRCTICHKEFPTGQALGGHKRKH 340
                 79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-4244267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.25E-8244266No hitNo description
PfamPF139127.9E-13244268IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.466244271IPR007087Zinc finger, C2H2
SMARTSM003550.0046244266IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
SuperFamilySSF576671.25E-8313340No hitNo description
PfamPF139122.6E-12317342IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995318340IPR007087Zinc finger, C2H2
SMARTSM003550.049318340IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280320340IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MHPQAPTTAS HIHPSTTTQP PRSVHPTLPR SHIHYRSSFS FYHRSAQQRR QVAHPGFPFA  60
SSPCLSLHVD HDFFVPPACL ACLACLLHST PPTRPHSPHS HHTTAKSETP PSNHHSTASQ  120
PATARTSRSS GQENSSPVSS EKLTTLCRAA MSSMELLHAV IPEAPLAPAP APATTTSSSA  180
TATSGDEGAH VPQGWAKRKR SRRQRSEEEN LALCLLMLSR GGNHRVQAPP PVVVPAAAPA  240
AAEFKCSVCG KSFSSYQALG GHKTSHRAKL PTPPAPAVPV VEAPVPITAI PPPIEVREPA  300
TSSTAASSDG AAASSRVHRC TICHKEFPTG QALGGHKRKH YDGGAASAAA STDLLATAAA  360
AETSEVGSSG NGSSAARAFD LNLPAVPEFV FRCGKPGKMW EDDEEVQSPL AFKKPRLLMT  420
A
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019658.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463836.11e-122zinc finger protein 1
SwissprotQ424301e-99ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A1E5VCF00.0A0A1E5VCF0_9POAL; Zinc finger protein 1
STRINGSi039857m1e-123(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-22zinc-finger protein 2