PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do012422.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Trihelix

Protein Properties

Length: 305aa MW: 34630.6 Da PI: 9.6922

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do012422.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.7	4.6e-21	85	181	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt ++v++L+ a++++++++ ++ ++k++W+ vs++m ergf +sp+qC++k+++lnkryk+++e+ +++ +++ +++ ++++q Do012422.1 85 KWTSNMVKLLVSAVSYIDDDIDADHgtssgrrkhamlKRKGKWRLVSSAMTERGFFVSPQQCEDKFNDLNKRYKRLTEILGRGrACQIVEKPALLEQ 181 7************999999987555677888999899***************************************99956888888877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-19	83	208	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MEGNLTPRAL IPGGAPFDLG QPFHFAAQPQ VVQVHQGAFA SPAANQMEGL GSVVKASLSS 60 EEDADDGHHG HGKAAASASQ WHRVKWTSNM VKLLVSAVSY IDDDIDADHG TSSGRRKHAM 120 LKRKGKWRLV SSAMTERGFF VSPQQCEDKF NDLNKRYKRL TEILGRGRAC QIVEKPALLE 180 QVSLSGKLKE EAKKHLSSKH LHYEEMCSYH NHNRQCLLDD PVLQTSEKNP SGMTAIQIER 240 ERLKIKGEML KLEQNHLKWL RSSKEQDREL QKMKLENERM ELKNEQLELK LRLKEIEMGI 300 KPKRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do012422.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806041.1	1e-150	uncharacterized protein LOC112884725
TrEMBL	A0A1E5VNL4	0.0	A0A1E5VNL4_9POAL; Uncharacterized protein
STRING	Pavir.Aa01737.1.p	1e-149	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	8e-54