PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011519.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 411aa    MW: 44021.3 Da    PI: 7.6445
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011519.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.78.2e-135882327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                ++ C++++rtG C++G++CkF+H+p
  Do011519.1 58 EPDCSYYMRTGLCRFGATCKFNHPP 82
                789********************97 PP
2zf-CCCH30.94.6e-10119143327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C +++rtG+Ck+ ++CkF+H+p
  Do011519.1 119 EKECAYYLRTGQCKFASTCKFHHPP 143
                 579********************97 PP
3zf-CCCH40.15.9e-13277302227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+f+++tG Ck+G+ CkF+H++
  Do011519.1 277 DQPECQFYMKTGDCKFGAVCKFNHPK 302
                 689*********************96 PP
4zf-CCCH37.63.6e-12322348127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C f++r+G+Ck+G++CkF H++
  Do011519.1 322 PGEPVCTFYSRYGICKFGPNCKFDHPM 348
                 5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9485583IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-65582IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-105882IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-56083IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-46181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892116144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5117144IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4118143IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-7119143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455275303IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5275302IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9277302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5278304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-5281303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6320347IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7321348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99321349IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9323348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4326346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MAAAGAGAGG GGEGSSSSPA GLAIGPHHHG SAEEAMWQMT IGGGESMEPG PFPERIGEPD  60
CSYYMRTGLC RFGATCKFNH PPNRKLAVAA ARMKGEYPYR VGQPECQLSF TCSLLLQNEK  120
ECAYYLRTGQ CKFASTCKFH HPPPSNTMVA VRGSVYSPGQ SATSPGQHTY PGAVTNWTLS  180
RSASFIASPR WPGHSGYAQV IVPQGLVQWN PYAAQMGSSS PDDQQRTPGT TQYYTGSHQS  240
ETTGMGEHGM FPSYQAGPVP VGLYAVQGEN IFPERPDQPE CQFYMKTGDC KFGAVCKFNH  300
PKERLIPAPN CALSPLGLPL RPGEPVCTFY SRYGICKFGP NCKFDHPMGT LMYGTATSPT  360
GDAATMHYQL ASSPGHPERL LDSGSGRSHR ISQSDSQQIP PGNGSTEREA S
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011519.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810066.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A1E5W4310.0A0A1E5W431_9POAL; Zinc finger CCCH domain-containing protein 66
STRINGBRADI4G08050.10.0(Brachypodium distachyon)
STRINGOPUNC12G08520.30.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-120zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]