PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008629.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 299aa    MW: 31671.7 Da    PI: 5.5893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008629.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-18104152355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++GVr ++ +g+++AeIrdp +   rkr +lg+f+taeeAa+ ++ a+++l+g
  Do008629.1 104 FRGVRLRP-WGKYAAEIRDPAQ---RKRLWLGTFDTAEEAAAVYDDAALRLKG 152
                 8*******.**********943...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-34103166IPR001471AP2/ERF domain
PROSITE profilePS5103222.326103160IPR001471AP2/ERF domain
PRINTSPR003672.5E-9104115IPR001471AP2/ERF domain
CDDcd000186.91E-28104162No hitNo description
SuperFamilySSF541711.63E-20104160IPR016177DNA-binding domain
PfamPF008472.2E-10104152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-28104160IPR001471AP2/ERF domain
PRINTSPR003672.5E-9126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSSADSLASC RSRRAGPPLP RPKRIRVSFV DADATDTDSS GDEDERARRR VREVIDIDME  60
AAASAPARAA QAPALVPPEK RQLLPSAAAA LARRRAAAGF RRPFRGVRLR PWGKYAAEIR  120
DPAQRKRLWL GTFDTAEEAA AVYDDAALRL KGSQAVVNFP PAPVAPSPCI KLRSRRGLPK  180
DTAASDPEAD DGDALASPLA PSPAPLEPKP EPQAVDDAPF CPFASPTSVL RYAAGEVPTA  240
PALPAFDFLY GELGDIGAAT APPSKAAAAE FEWLPWWEGE DFVTATGLTQ SAGAAVSVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20102160463ATERF1
3gcc_A2e-20102160463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008629.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804895.11e-121ethylene-responsive transcription factor CRF4-like
TrEMBLA0A1E5W1X90.0A0A1E5W1X9_9POAL; Uncharacterized protein
STRINGPavir.Ia04256.1.p1e-111(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.12e-10cytokinin response factor 3