PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do006820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | B3 | ||||||||
Protein Properties | Length: 1419aa MW: 157527 Da PI: 9.1189 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.6 | 2.5e-14 | 436 | 509 | 10 | 84 |
HHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 v +++ l l +f++++g+ + ++++tl++ s +sW+v ++ +++y++++ Wk+F+++n+LkegD+++F + Do006820.1 436 VINTSTLALAIDFCNAIGLRE--PFMITLKTsmDSTESWKVHG-HTSEDSSYMISDDWKRFCQENNLKEGDMCTFFV 509 5677889999********995..5566666622666******9.5677778************************74 PP | |||||||
2 | B3 | 47.3 | 3.9e-15 | 579 | 660 | 5 | 90 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +++ ++ k+ ++lp f++++g+ +e+ t+tl++ +s sW+ ++ + k + ++ ++GWk+F+++n++kegD+++F +++ + Do006820.1 579 EINTSTIKN-VFSLPLAFCKAIGLR-REPCTVTLKTsmSSTTSWQARV-FPYKHCNHLRGSGWKRFCRENKIKEGDVCTFNVVD---T 660 556666666.49**********877.466678887733666*******.6666678999*********************9654...3 PP | |||||||
3 | B3 | 49.4 | 8.3e-16 | 1204 | 1276 | 17 | 93 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +l+k+f++++g+ k++++tl++ s sW+v +k+ +++v+ +GWk F+++n LkegD+++F++ +e++l+ Do006820.1 1204 SLSKSFCDAIGLRKPCTITLKVPMNSTSSWQVGGLPCKN-NSFVIVRGWKMFCRENSLKEGDICTFTV---METTLW 1276 689**************9999999**********54444.459************************5...445555 PP | |||||||
4 | B3 | 36 | 1.2e-11 | 1339 | 1412 | 1 | 75 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 ++k++++s++ +++ l+lp f++++g++k++++tl+ +s sW+v + k+ ++yv + Wk+F+++n++k Do006820.1 1339 WIKKEINSNAIEHC-LSLPPAFCNAIGLQKPCTITLKTSMSSTSSWQVLVVPYKNTSHYVRGLDWKRFCEENEIK 1412 7899*********9.**************99988888888999*******88999999**************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 2.56E-7 | 1 | 88 | No hit | No description |
PROSITE profile | PS50863 | 9.037 | 1 | 91 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0064 | 1 | 91 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.06E-12 | 5 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.8E-11 | 7 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-7 | 174 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.2 | 251 | 360 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.28E-8 | 307 | 362 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-7 | 323 | 368 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.274 | 325 | 360 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.039 | 427 | 523 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.3E-5 | 433 | 523 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.69E-15 | 435 | 521 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.39E-8 | 436 | 507 | No hit | No description |
Pfam | PF02362 | 1.7E-11 | 436 | 519 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-13 | 440 | 521 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.828 | 574 | 671 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0027 | 576 | 673 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-15 | 578 | 668 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-14 | 579 | 668 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.6E-13 | 583 | 666 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.90E-11 | 589 | 655 | No hit | No description |
PROSITE profile | PS50863 | 8.036 | 695 | 787 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0096 | 698 | 787 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.87E-6 | 706 | 785 | No hit | No description |
SuperFamily | SSF101936 | 1.96E-9 | 707 | 789 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-9 | 707 | 789 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.31 | 814 | 906 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 6.964 | 814 | 906 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.1E-9 | 819 | 908 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-8 | 819 | 908 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-15 | 929 | 1031 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-16 | 930 | 1031 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.107 | 933 | 1029 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.50E-9 | 934 | 1026 | No hit | No description |
SMART | SM01019 | 8.5E-6 | 936 | 1029 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.743 | 1188 | 1284 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-4 | 1196 | 1286 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-12 | 1204 | 1279 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.02E-15 | 1204 | 1283 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-15 | 1204 | 1282 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.43E-11 | 1204 | 1269 | No hit | No description |
SuperFamily | SSF101936 | 3.92E-8 | 1334 | 1412 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-8 | 1334 | 1412 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.4E-8 | 1339 | 1412 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.06E-5 | 1346 | 1412 | No hit | No description |
PROSITE profile | PS50863 | 8.134 | 1353 | 1419 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1419 aa Download sequence Send to blast |
MLSPDSMENM LIPAKFVQHY IPKEHLNNRV AIIFGPLGKI SQVELHMNRL GLFFTGGWSK 60 FLASHSVTAV NDLLLRYESN MVFTVKVFEP DGCQRRSKHN DITMQQYIEE LLEAPSASNL 120 KLCKIELPSS EGEKIPKGSM NPLNKASLWR NSVYEIGPPS WIQKQMNVAA LEKGLALAKA 180 FCDAIGLPKT CTITLKTSIS STKFWPVRGH PCKEKSYLLV QDWSSSPAAS QYHTVTSHRL 240 RPPMSPVMAS SWSCGNRGAA GRKDLRVLLP FTSNSLLIPD ELAGDIAAEE AFVVTPFGKR 300 RVRSVEPIPA KFVQNHIPKG HMNNRGWSQF LAIHGITKDD CLLLRYEGNM TFTVKVFGPS 360 GCQIESKHNG IRMQQISTLP GTEKQQELPS PLQKCKSKND QLCNEEQKKP KASTTSLNKT 420 PFGNYKIGPV SWIKKVINTS TLALAIDFCN AIGLREPFMI TLKTSMDSTE SWKVHGHTSE 480 DSSYMISDDW KRFCQENNLK EGDMCTFFVV EATLWHVVIT RGKEKGTPSA SSSKRKSDND 540 MSISEELKGT NGHINSSNNA SSKRRCAFEI GPRTWMRKEI NTSTIKNVFS LPLAFCKAIG 600 LRREPCTVTL KTSMSSTTSW QARVFPYKHC NHLRGSGWKR FCRENKIKEG DVCTFNVVDT 660 KLWHVVIAHH RRRATQLPPR TPQDMASPGN HGAAARKHLR VLLPFTSDSL RIPDELAGEI 720 SSEEVIIVVP YGRGAVQRVE VGQDGDGAFL GRGWPEFADA CGVGAGWFLV LRHHGAGVLT 780 VKAFDASCCL NSLLKPQQAL ATAFCNAIGL PALSMITLKT STDSPGSWQR IPDELAAEIG 840 AWEALVVVPF GKGKVPRVEV GRDGDGAFLG RGWPEFAAAC GAGAGWLLIL RHHGGGVLTV 900 KVFDASCCLR ELGSPPPAPA VGEAMSSNNS SRRPQFISTL PPDSMENMLI PAKFVQHYIP 960 KEHLNSHMAV VFGPLGKCCQ VELELNQLDV FFAGGWSQFV AFHGITDANS LLLRYEGNMV 1020 FTVKMFGSNG CQGESIHKNI KIQQNIEKQK EAPPASFQKH KSKTDWPSSE TQKISKATLL 1080 TRSIYEIGPP SWIKKVINTY TLEKHLVSTT ISLLDMMKSY IQQEYELKKI LGYGIGDFFF 1140 GNRFLQCNWA AGTLHDHTQD LNEQHQILAE VTFPIVIVTV LLHQPALGVN AKTSIICTSA 1200 PEESLSKSFC DAIGLRKPCT ITLKVPMNST SSWQVGGLPC KNNSFVIVRG WKMFCRENSL 1260 KEGDICTFTV METTLWHVVI THYNKQESPS ASSRKLYHSK SKNDRSSSEG QERPEGSMTY 1320 MKMALPKTTC VFEIRPPAWI KKEINSNAIE HCLSLPPAFC NAIGLQKPCT ITLKTSMSST 1380 SSWQVLVVPY KNTSHYVRGL DWKRFCEENE IKGTGFSIS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do006820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683933.1 | 1e-102 | putative B3 domain-containing protein Os04g0347400 isoform X4 | ||||
Refseq | XP_022683934.1 | 1e-103 | putative B3 domain-containing protein Os04g0347400 isoform X5 | ||||
TrEMBL | A0A0A9S193 | 1e-116 | A0A0A9S193_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Gb02050.1.p | 1e-168 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 1e-10 | B3 family protein |