PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do005083.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 206aa MW: 22564.4 Da PI: 4.8552 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.3 | 6.3e-11 | 1 | 27 | 20 | 46 |
HHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 20 ilKKAeELSvLCdaevaviifsstgkl 46 ++KKA+ELS+LC+a va++ fs+ g+ Do005083.1 1 MFKKASELSILCGAMVAIVAFSPAGRP 27 69*********************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 3.6E-12 | 1 | 30 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-13 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 0.006 | 1 | 33 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.741 | 1 | 34 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MFKKASELSI LCGAMVAIVA FSPAGRPFSF GSPSFKAVID RFLTLIGPAM SGESCDSSSG 60 ETNTMKEGLE CTELEQSIEG EKKRKERLKE AIERNMDGRL MDWLTANAYP SGLDELQEFH 120 KKLVEIQDAV KEKIKQVLQE ERHPTRLYPP RFVDLASKYQ LDSQTATPIS SVAPNSNHGP 180 DLNESLASGD HAIGTSVNCP SDQVDG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do005083.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986970.1 | 1e-100 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A1E5WG26 | 1e-152 | A0A1E5WG26_9POAL; Uncharacterized protein | ||||
STRING | Si038960m | 3e-99 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G66656.1 | 4e-15 | AGAMOUS-like 91 |