PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do004747.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | C3H | ||||||||
Protein Properties | Length: 354aa MW: 37709.2 Da PI: 6.6973 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.8 | 8.9e-09 | 120 | 140 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd C FaHg Do004747.1 120 ACPDFRK-GGCKRGDACEFAHG 140 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.0E-4 | 114 | 144 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 115 | 141 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.159 | 116 | 142 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-6 | 119 | 142 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-7 | 120 | 140 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 150 | 173 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.258 | 150 | 174 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MMMMGEGVSV PPWSHHLPVS GVDVGGGDEV EVTPYLLAAL RQYLPCNDAA GLGSADDDEA 60 AAAMAAGVDG FGCDEFRMYE FKVRRCARAR SHDWTECPFA HPGEKARRRD PRKYHYSGTA 120 CPDFRKGGCK RGDACEFAHG VFECWLHPAR YRTQPCKDGT ACRRRVCFFA HTPDQLRVLP 180 PQQTSPRGAG VGASPLADTL MSPPKSPPSE SPPLSPDGAY RRGSWSGVGS PVNEVLASLR 240 QLRLSKANSS PSGGWSGYPA SAVAYGSPTA AGLYSLPSTP MATSTTMGGF MANLEPLDVS 300 FGGGDEEPVQ RVESGRALRD KVFERLSREG AVSGDTSTSG FGGPDVGWVS DLIN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do004747.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055585 | 0.0 | BT055585.2 Zea mays full-length cDNA clone ZM_BFc0052C06 mRNA, complete cds. | |||
GenBank | BT085217 | 0.0 | BT085217.2 Zea mays full-length cDNA clone ZM_BFb0336L11 mRNA, complete cds. | |||
GenBank | EU957563 | 0.0 | EU957563.1 Zea mays clone 1597250 mRNA sequence. | |||
GenBank | JX428469 | 0.0 | JX428469.1 Zea mays subsp. mays clone pUT3065 C3H47 C3H type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817903.1 | 0.0 | zinc finger CCCH domain-containing protein 2-like | ||||
Swissprot | Q9FU27 | 1e-163 | C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A1E5VG23 | 0.0 | A0A1E5VG23_9POAL; Zinc finger CCCH domain-containing protein 2 | ||||
STRING | Pavir.Eb00253.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 2e-92 | C3H family protein |
Publications ? help Back to Top | |||
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