PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do004661.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 197aa MW: 20475.9 Da PI: 4.4747 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17 | 1.1e-05 | 123 | 153 | 20 | 55 |
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +L+el+P+ +K++ +++LekA+ Y+k Lq Do004661.1 123 LRTLQELVPNG-----TKVDMVTMLEKAISYVKFLQ 153 66788888886.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.013 | 103 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.27E-7 | 122 | 157 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-8 | 122 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-7 | 124 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MALVREHSGY GGFDSAEAAA AFDALRYGHD VLLGFDAAAL FRGSGTSASG AYVADGGKAW 60 PSTGSASVLA FDRATAAAAA PVGEEECDAW IDAMDQSYGG APAAPEARHA TTASVGFDAA 120 TGLRTLQELV PNGTKVDMVT MLEKAISYVK FLQLQVKVLA TDEFWPAQGG KAPEISQVRD 180 ALDAILSSAS QRRQLMN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do004661.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372884 | 3e-36 | AK372884.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3015A08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953650.1 | 6e-42 | putative transcription factor bHLH086 | ||||
TrEMBL | A0A1E5VS73 | 2e-45 | A0A1E5VS73_9POAL; Transcription factor bHLH83 | ||||
STRING | Pavir.Aa00612.1.p | 3e-51 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1412 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 3e-38 | ROOT HAIR DEFECTIVE6 |