PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do004162.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Protein Properties

Length: 493aa MW: 55204.4 Da PI: 7.4184

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do004162.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.3	2.9e-18	160	240	13	99
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +++p +fa++++g s ++l+++sg++W++ + + + +vl++GWkeFv+a+ + eg ++Fk++g s+f v +f++ Do004162.1 160 TETMSIPARFANNFNGH--ISEVVSLKSPSGKTWSIGV--ANDTDVVVLQSGWKEFVSAHSIAEGNYLLFKYTGVSSF--DVLIFDS 240 4569*****888666..6779***********..*******************************99999..8999886 PP
2	B3	45.7	1.2e-14	385	484	1	99
EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEE CS B3 1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsefelvvk 95 f++v+ ps+v + g + ++ +fa+++ g +++ +++l+ +s +W v+++++k ++ + ++GW +Fv +ngL + D+++F+l+ g+++ +++v+ Do004162.1 385 FVQVMHPSHVRGKksGVVAISSEFAAKYLGATRG--DIILRRaSSKGKWHVRYNINKFCRG-LTGRGWCGFVGDNGLLDHDVCLFELMmGKQRPTMTVH 480 6677777777654448899*******666555..68888846669**87777766.6799******************9845599999999 PP EE-S CS B3 96 vfrk 99 v rk Do004162.1 481 VMRK 484 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.0E-23	145	243	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.51E-23	146	246	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.565	148	241	IPR003340	B3 DNA binding domain
CDD	cd10017	2.47E-18	149	239	No hit	No description
SMART	SM01019	2.4E-10	151	241	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-15	160	239	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.18E-16	379	483	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.5E-18	379	483	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.65E-12	383	480	No hit	No description
Pfam	PF02362	1.7E-12	385	484	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-4	385	485	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.559	402	485	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MNATRKSQRD ERVGMPSPYH DIAIKSSPSA KKAREQLDNS NQGNNMIDIS SSSSLPKSSG 60 DATFSEDDEE VQFVPRYMLP CGTYLTGTLK KKVEEKVRAI HSEIPTHVCV MTKSNVYGRS 120 RCMNMDKNCK ICMEWQEHCY WSHMADDKKH FFKPMVGDFT ETMSIPARFA NNFNGHISEV 180 VSLKSPSGKT WSIGVANDTD VVVLQSGWKE FVSAHSIAEG NYLLFKYTGV SSFDVLIFDS 240 SGCEKTSPHF AKNHGYERIE GSAGVEGARH DSHKFKAGKD CTPQLVPSGD DEDDDDDDME 300 LAVLKNTSRS IPKPCKLKHY LDIEQAHCQV KIDEDDLEVD EGDAPAKTGY YFCKNGPVSG 360 YHLTEEDREE ISSIRIPAQS TNPVFVQVMH PSHVRGKKSG VVAISSEFAA KYLGATRGDI 420 ILRRASSKGK WHVRYNINKF CRGLTGRGWC GFVGDNGLLD HDVCLFELMM GKQRPTMTVH 480 VMRKVRGRFV LLR

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MNATRKSQRD ERVGMPSPYH DIAIKSSPSA KKAREQLDNS NQGNNMIDIS SSSSLPKSSG  60
DATFSEDDEE VQFVPRYMLP CGTYLTGTLK KKVEEKVRAI HSEIPTHVCV MTKSNVYGRS  120
RCMNMDKNCK ICMEWQEHCY WSHMADDKKH FFKPMVGDFT ETMSIPARFA NNFNGHISEV  180
VSLKSPSGKT WSIGVANDTD VVVLQSGWKE FVSAHSIAEG NYLLFKYTGV SSFDVLIFDS  240
SGCEKTSPHF AKNHGYERIE GSAGVEGARH DSHKFKAGKD CTPQLVPSGD DEDDDDDDME  300
LAVLKNTSRS IPKPCKLKHY LDIEQAHCQV KIDEDDLEVD EGDAPAKTGY YFCKNGPVSG  360
YHLTEEDREE ISSIRIPAQS TNPVFVQVMH PSHVRGKKSG VVAISSEFAA KYLGATRGDI  420
ILRRASSKGK WHVRYNINKF CRGLTGRGWC GFVGDNGLLD HDVCLFELMM GKQRPTMTVH  480
VMRKVRGRFV LLR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do004162.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982409.2	0.0	B3 domain-containing protein Os03g0622200
Swissprot	Q10GM3	1e-134	Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBL	A0A1E5WJT8	0.0	A0A1E5WJT8_9POAL; B3 domain-containing protein
STRING	Pavir.Ib03973.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP562	34	179

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	6e-28	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]