PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003958.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 222aa MW: 25369.1 Da PI: 9.7186 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.5 | 5.5e-11 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n++ r+ + +R + ++KK + L +LC+++++++++++ Do003958.1 11 IVNNTTRHAVYKRRYKSLMKKTSDLATLCGIKACMVVYGE 50 779999********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.9E-11 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-16 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.498 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.41E-20 | 2 | 81 | No hit | No description |
Pfam | PF00319 | 2.4E-10 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MARKKVNLQW IVNNTTRHAV YKRRYKSLMK KTSDLATLCG IKACMVVYGE GETQPVVWPS 60 VLEAKRVLKK FKSMPDRFKK MQNQEDFLHS RISMLQGQVC KSDHYNRELE TANLLHESLY 120 GCRTVLDTTT IEELNNLRWM VHTRTMEAKE RLRQLVGDGS IPKLQTSPTS PPQAFYTYTE 180 MQRLPSPEQH QDLQQGEPAN LDVNGGGLSA MVHSSFTGSH NG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003958.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971693.1 | 5e-68 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1E5WKW8 | 1e-168 | A0A1E5WKW8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb00487.1.p | 6e-75 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 6e-25 | AGAMOUS-like 80 |