PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do003887.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 20608.8 Da PI: 8.4709 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 2.8e-18 | 18 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp k++ ++lg+f++ae Aa+a++aa+++l+g Do003887.1 18 RYRGVRKRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRG 67 59*******.7*********83...36*************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-11 | 18 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-33 | 18 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.22E-16 | 18 | 74 | No hit | No description |
PROSITE profile | PS51032 | 21.97 | 18 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-21 | 18 | 75 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-29 | 18 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-8 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-8 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
MRRAKPPQPQ PSPSPEIRYR GVRKRPSGRY AAEIRDPAKK TPIWLGTFDS AEAAARAYDA 60 AARSLRGPTA RTNFPSAAAS APPRRRAAPS AAAAASAAAA AAAAAATSSL SSTVESWSGG 120 ATRAAAALAR SAVPTTEEED DEDCRSYCGS SSSVLCEDGG GDDAAASRAP LPFDLNLPPP 180 HDVAAEADQM GARYDTLLRL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 18 | 76 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do003887.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021306174.1 | 5e-79 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A1E5W6B3 | 1e-133 | A0A1E5W6B3_9POAL; Uncharacterized protein | ||||
STRING | Sb10g028110.1 | 4e-76 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6102 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15210.1 | 5e-19 | ethylene responsive element binding factor 4 |