PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003251.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family G2-like
Protein Properties Length: 519aa    MW: 57379.4 Da    PI: 5.8178
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003251.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.21.3e-31125178255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  Do003251.1 125 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 178
                 8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.627121181IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-29121179IPR009057Homeodomain-like
SuperFamilySSF466894.3E-14123179IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-22125180IPR006447Myb domain, plants
PfamPF002499.0E-9126177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MVEQYKMVAR EEQVMRELKD KGVLVEILED DEERLINNKL LDLNEDFDEE TEEGEVGGDE  60
EDEGEEGDDG GSTTDVGGSG SSSNNSSTNN NSESKKGDTK GGDKSEGSGE QRVPSVRQYN  120
RSKMPRLRWT PDLHMAFVHA VERLGGQERA TPKLVLQMMN VRGLSIAHVK SHLQMYRSKK  180
LDQDGRPKGA ISSAYSPMDF HFMRGDGRFH EMSFFQRAAA LSSKPEHGSF FASRNCSAPE  240
LSRIYGLLQH RQAPQTFDFR NSRNHEWASS QREAIISRKD VTVTEPSTAP HQIQTHPLAA  300
SVALRSERRW WPFTDAAAAA TIGERRVETG TDASFANSIG SSSRPHLWAM STVVSGDRRL  360
PFRWRPGGSG RDVVAGYTSN SAKITTRSSD PVVIDDEALD AQQLEKHVEA RDSVMPAYKA  420
CRKRSSPVEA QDGTADLQLS LSPTTVMEAK KRKTTALSDQ EVMDNSELSI SLSLSPPAAA  480
SIQKQQQERT RRSNDSGSSD EAILGQSTLD LTMSIRALE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-17126180357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-17126180357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-17126180357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-17126180357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003251.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824416.10.0uncharacterized protein LOC112899951 isoform X2
TrEMBLA0A1E5V6470.0A0A1E5V647_9POAL; Uncharacterized protein
STRINGSi016955m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42660.12e-34G2-like family protein