PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002854.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | WRKY | ||||||||
Protein Properties | Length: 344aa MW: 35822 Da PI: 6.7158 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.9 | 8.5e-33 | 141 | 198 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ Do002854.1 141 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 198 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-33 | 125 | 199 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-28 | 132 | 198 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.861 | 135 | 200 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.6E-39 | 140 | 199 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-26 | 141 | 198 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MAGAAGEAGV VGGGEWPFSA DAYADSSAIF AELGCWAAGL DGAGGAELVL PALEPPEDKD 60 YTLPPLPLSE PAGSVSVDGG ASSSSTDDGA VQEDAADGNP AAATEAASKP PAPGKTGKSG 120 QKRARQPRFA FMTKSDIDHL EDGYRWRKYG QKAVKNSPFP RSYYRCTNSK CTVKKRVERS 180 SDDPSVVITT YEGQHCHHTI TFPRAHLHAA LAAAHMGSFS AAAHHHLYST TNDMMNLPPL 240 HLPTAAAAAA AHQQQINNDP LACRPAASMS PSSLLRPLHH CNGQELLAAT YPAATLSSST 300 MTMPAASSVV VSTHQSPSSP ARSAPVPVDK GLLDDMVPPA MRHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-25 | 130 | 197 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-25 | 130 | 197 | 7 | 74 | Probable WRKY transcription factor 4 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002854.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY341859 | 8e-84 | AY341859.1 Oryza sativa (japonica cultivar-group) WRKY19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803236.1 | 1e-128 | probable WRKY transcription factor 48 | ||||
TrEMBL | A0A1E5VGB7 | 0.0 | A0A1E5VGB7_9POAL; Putative WRKY transcription factor 57 | ||||
STRING | Pavir.Bb00073.1.p | 1e-148 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 3e-54 | WRKY DNA-binding protein 57 |