PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002158.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 463aa    MW: 49277.2 Da    PI: 9.9797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002158.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-19219269256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Do002158.1 219 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 269
                 59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.93E-32218278No hitNo description
PROSITE profilePS5103223.024219276IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23219277IPR016177DNA-binding domain
SMARTSM003802.3E-38219282IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-32219277IPR001471AP2/ERF domain
PfamPF008472.8E-12220269IPR001471AP2/ERF domain
PRINTSPR003678.4E-11220231IPR001471AP2/ERF domain
PRINTSPR003678.4E-11242258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEPADRGHGR GRGRWRGWKG KGVSSGSAAG SRQLAPVLGD APAAASLRPL KKIRSPDRCL  60
NRSLSSLSSA PPSPVSSSVS NPMSPPATSL PSTRHLFPFA YDPAPAASAA TAAAAAAPRL  120
MPLLQYTSVY EQPLPPQQQH PLQHQQMISF GGSQQPPPQL AAAASPLFPP QLVAPVVQQQ  180
MLLRYWSEAL NLSPRGFRTG AVPPALYQQL LRAPGPPKLY RGVRQRHWGK WVAEIRLPRN  240
RTRLWLGTFD TAEDAAMAYD REAFKLRGEN AKLNFPDVFL GKGRVGGSGR TSASAAAASC  300
SSSSSSAPPT PDETNTKQAQ QHHGEQPSNS EAKLLFPETE QAKNSEPEPN PQLQPADHQG  360
GGGNAAAFQP SVTSSGVWVP ADEAWFNAWG PGSSVWDYDM DNAHGLFLQS RFASEATSMD  420
YVSSAPEVPA TPAAGTAMAS AASISLPPPR PPPPSSPTYM WKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-20218276463ATERF1
3gcc_A9e-20218276463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002158.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953233.10.0ethylene-responsive transcription factor ERF053
TrEMBLA0A1E5UX880.0A0A1E5UX88_9POAL; Ethylene-responsive transcription factor ERF053
STRINGSi019997m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.15e-36ERF family protein