PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca32673.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family CAMTA
Protein Properties Length: 906aa    MW: 100067 Da    PI: 5.8679
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca32673.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-168.88.7e-228503476
        CG-1 34 pksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvg 76
                 + gsl+L++rk++ry+rkDG++w+kkkdgktv+E+hekLK +
  Dca32673.1  8 TPGGSLFLFDRKVLRYYRKDGHNWRKKKDGKTVKEAHEKLKGN 50
                568**************************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010764.0E-61109IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143727.731108IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-15952IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.5E-7339426IPR013783Immunoglobulin-like fold
PfamPF018337.0E-7341420IPR002909IPT domain
SuperFamilySSF812963.64E-18341426IPR014756Immunoglobulin E-set
CDDcd001028.37E-4341428No hitNo description
CDDcd002042.68E-14486611No hitNo description
PfamPF127965.1E-8496577IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.5E-18498616IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.714502623IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.13E-17509616IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.686552584IPR002110Ankyrin repeat
SMARTSM002480.0011552584IPR002110Ankyrin repeat
SMARTSM002482000591620IPR002110Ankyrin repeat
SuperFamilySSF525403.19E-8724778IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.044727749IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.785729757IPR000048IQ motif, EF-hand binding site
PfamPF006120.0021730748IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0012750772IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56751775IPR000048IQ motif, EF-hand binding site
PfamPF006125.8E-5754772IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MADKGSNTPG GSLFLFDRKV LRYYRKDGHN WRKKKDGKTV KEAHEKLKGN RSSIRDIEPV  60
LSTSPVSNSF TSSASTSYND AFGGNSGSPS AVSSLTSAYE DIESEDNYQA MSKYPSSLNF  120
PHGEVNFANN KMGGVMNSNI LPNTNSYQAA QLSDPGINYV ALTQKGNGYH DENQYTTFDL  180
ASWEDVFEQC TRNSGGSPLQ SVNSSSLPSG NPGNYNDFGQ LLDVGFGIDF SSEGSLAPQI  240
SKRNHPTELS SAEFPDTSNI SSAAKQPLLG SIRAEEGLQK VDSFSKWMTK ELGGVDDLNV  300
KSSSSLSWQN IDTDAEVDDP SIQLENYSMS PSIAQDQLFD IHDFSPSCAS MESETKVLIT  360
GKFLVSPSEV SRCNWSCMFG EVEVPAEVLG NGVLCCYAPP HNAGRVPFYV TCSNRFACSQ  420
VREFEFLEES QDFNSRNVSM GVKEKQLLLQ LERLLSTRSP GSLDSFHYIK QQPVVNKIIS  480
LMEDDLCLGV ENHMKEKLLS WLLDKVSEDG KGPNILDEEG QGIVHVAAAL GYDWIIPPTL  540
AAGVSVNFRD INGWTALHWA ASFGREETVA LLVAHGAASG ALTDPSPEFP LGRTAADLAS  600
ANGYKGISGF LAEHSLTAHL ETLTMSERNV YGTLESSLSK AVQTIREKVA TPAVCDGSDL  660
SLKDSLEAVR NATQAAGRIH QVFRMQSLQR KQNISSAGND DESLLTDERL LSLISSRVHK  720
PGHSNQQVNS AAVQIQKKYR GWKKRKEFLI IRERVVKIQA HVRGHQVRKR YKTVVWSVGI  780
LEKVILRWRR KGTGLRGFRP DALKAPVVES KPPEEDDYDY LKEGRKQTEE RLQKALVRVK  840
SMVQYPEGRA QYRRLLTAVE GFQKNQQQAR SSSLSRSEIA PVEAEDDMID VDSLFDDDNF  900
MAIAFE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690491.10.0PREDICTED: calmodulin-binding transcription activator 2 isoform X1
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLA0A0K9QYQ20.0A0A0K9QYQ2_SPIOL; Uncharacterized protein
STRINGXP_010690491.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.10.0ethylene induced calmodulin binding protein