PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_031517 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | YABBY | ||||||||
Protein Properties | Length: 193aa MW: 21293.2 Da PI: 8.3964 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 233.6 | 4.7e-72 | 13 | 176 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 + fs s+q+Cyv+C+fC+t+lavsvP +sl+++vtvrCGhCt+l++ ++++s ll+ ++l+++l +++ + ++ ++++ + + ++++s++ s DCAR_031517 13 HSFSPSDQLCYVNCSFCHTVLAVSVPCSSLSRTVTVRCGHCTNLFT--VNMRSLLLPPPNQLGNNLFPPQNHAEEIRGSASDNMFMNQTSPTDSLIP- 107 56899***************************************99..6688999*************99999999999888888888777766554. PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +e+p++p ++rPPekrqrvPsaynrfikeeiqrika+nP+ishreafsaaaknWahfP+ihfgl DCAR_031517 108 --IRGGVNELPKPPATNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPEISHREAFSAAAKNWAHFPNIHFGL 176 ..35678899**99*******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.7E-68 | 17 | 176 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 8.64E-8 | 121 | 170 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.4E-5 | 123 | 170 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSSSQAFSPP DLHSFSPSDQ LCYVNCSFCH TVLAVSVPCS SLSRTVTVRC GHCTNLFTVN 60 MRSLLLPPPN QLGNNLFPPQ NHAEEIRGSA SDNMFMNQTS PTDSLIPIRG GVNELPKPPA 120 TNRPPEKRQR VPSAYNRFIK EEIQRIKAGN PEISHREAFS AAAKNWAHFP NIHFGLLPDE 180 SAFRVSREPI LV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017216519.1 | 1e-132 | PREDICTED: axial regulator YABBY 1 | ||||
Swissprot | O22152 | 9e-69 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A161ZNW1 | 1e-139 | A0A161ZNW1_DAUCS; Uncharacterized protein | ||||
STRING | cassava4.1_016451m | 3e-91 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-63 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_031517 |