PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027236
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CPP
Protein Properties Length: 763aa    MW: 82493.3 Da    PI: 6.4974
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027236genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.67.8e-16472509239
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                   +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk
  DCAR_027236 472 ACKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQECFNK 509
                  589**********************************8 PP
2TCR50.63.7e-16557595139
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  DCAR_027236 557 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 595
                  589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.4E-16471512IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.946472597IPR005172CRC domain
PfamPF036381.2E-11474509IPR005172CRC domain
SMARTSM011143.5E-17557598IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.4E-12559595IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MDTPERKHQL APPVSKFEDS PVFNYLNSLS PITSVKSVHI TQTFNSLTFS SPPSVFTSPH  60
VSTLRDSRVL RRHQFSDPSN SEFSSSHGDK EDKSGEATDI PHNVEQQQND NHVDVAGKSS  120
AEPLYETNVA IELPQTSSYE CVSPDCAKAS HCGLETNCIP ELAGSSKELI PYVQIRPGKE  180
SIEKEVHLEG PSHIQENKES AGCDWENLFS DEGDLLLFDT PNDSKTLIDP SQRSIEPGMG  240
FCSSLTNDLQ NPLAVNAVSA DNNSQLECGR DMSVVTDQDI LVSQSKPVAG DNGDNVDDEI  300
ASNLQRGMRR RCLVFEMVGS RRKRVDDGSN CSSSMLLQSN ENTASGDKCV VPLKPASNAP  360
KRRLPGIGLH LNTLAATSVD HKIINHDAFP PGGQPISVCG SAAYFNLSNS QQIVNSDLVV  420
TSSDIDTCPL EDGILNAENA ALGSGCMVNE VLDHSSPKKK KRRSDSGGES EACKRCNCKK  480
SKCLKLYCEC FAAGVYCVEP CSCQECFNKP IYEDTVLATR KQIESRNPLA FAPKVIRNSD  540
VMIEVGEESS KTPASARHKR GCNCKKSGCL KKYCECYQGG VGCSINCRCE GCKNAFGIKD  600
GSTSTETEVE IEGDAEQEKR AVNRSLQITT VHNDAEQKTS FALPATPLQI CGSSIQPFSS  660
KSKKPPRSSL LSIGGSSSGL YGTPRFGKLN SIQPLANIHD RKEEMPEILQ RNASPNSGVK  720
SGSPNSKRVS PPQSIGLSPG QRSSRKLILQ SIPSFPSLTP KH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1747459412120Protein lin-54 homolog
5fd3_B5e-1747459412120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308323RRRCLVFEMVGSRRKR
2456462PKKKKRR
3457462KKKKRR
4458462KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222750.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A175YR930.0A0A175YR93_DAUCS; Uncharacterized protein
STRINGXP_008224266.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-121Tesmin/TSO1-like CXC domain-containing protein