PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_027029 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ARR-B | ||||||||
Protein Properties | Length: 686aa MW: 75459.3 Da PI: 6.5533 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.4 | 1.3e-27 | 211 | 264 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv a +qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl DCAR_027029 211 KPRVVWSVELHQQFVAAANQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 264 79*******************.********************************8 PP | |||||||
2 | Response_reg | 77 | 7e-26 | 32 | 140 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+p+ +++l+++l+ +y e++ + +e al+ll+e++ +D++l D+ mp+mdG++ll++i e +lp+i+++a ++++ + + + Ga DCAR_027029 32 VLVVDDDPTCLMILEKMLRTCHY-EATKCNRAEIALNLLRENRngYDIVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKNVVMKGVTHGAC 126 89*********************.***************99999***********************6654.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ e+l + DCAR_027029 127 DYLIKPVRLEALKN 140 *********99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 8.4E-170 | 10 | 655 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.29E-35 | 29 | 154 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 4.6E-42 | 29 | 163 | No hit | No description |
SMART | SM00448 | 1.8E-30 | 30 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.381 | 31 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.7E-23 | 32 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.66E-27 | 33 | 145 | No hit | No description |
PROSITE profile | PS51294 | 10.02 | 208 | 267 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.69E-19 | 209 | 268 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-29 | 210 | 269 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-23 | 211 | 264 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-6 | 213 | 263 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence Send to blast |
MKLGGVQVAK SGSMPSSSSH GSTQQFPAGL RVLVVDDDPT CLMILEKMLR TCHYEATKCN 60 RAEIALNLLR ENRNGYDIVL SDVHMPDMDG FKLLEHIGLE MDLPVIMMSA DDSKNVVMKG 120 VTHGACDYLI KPVRLEALKN IWQHVVRRKK HVWKDIEQSG SVEDGKLQQQ TPDDADYLSS 180 ANEGSWRNSK RRKDEEEDAD DRDDDTSSLK KPRVVWSVEL HQQFVAAANQ LGIDKAVPKK 240 ILELMNVPGL TRENVASHLQ KYRLYLRRLS GQHQNALNGS FMGNPEATYG SISSFNDLEL 300 QAYAASGQLP AQNLAALQAA AFGRSSSKSV VSPLDQRNLF SFETPKLRFG EGQQQHLSNS 360 KQVNFLHGIP TNMEPKQLAN FHQAANSFGI NMQVGSHGTQ GSSLMMQMAQ PQSRSQIQND 420 ISGSYVSRLP PSIGQPVVSN VVSNGTSRVL TRPVYNHQVS QTSPVAGIST HHSNDLMRNS 480 FPLGGNSGIS SLASKVIPRE EAPIEIKGSQ GGSNYDVYSG QQQRKSQDWT IQNSGLAFDT 540 LQHANMRGNL DVSQAALVQQ SFSSRDAIEQ SRNSSVLPSV LLQQGYPSSG HSSSSSFGKG 600 IFSGVEENGH RNMPNTGQQL NAYFTDTSPR VKAELLEGNF YNNLLPDQYD QEDLMSALLK 660 HQQEGIVTVE NDFDFDGYPL DNLPV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-21 | 207 | 270 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017222992.1 | 0.0 | PREDICTED: two-component response regulator ARR2-like isoform X1 | ||||
Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
TrEMBL | A0A175YPM1 | 0.0 | A0A175YPM1_DAUCS; Two-component response regulator | ||||
STRING | XP_002519174.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3191 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.2 | 1e-169 | response regulator 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_027029 |