PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025840
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 332aa    MW: 37298.4 Da    PI: 6.385
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025840genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.7e-14167214355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h  +Er+RR+r+ ++f  L +l+P +     kK++Ka++Le A++YIk+Lq
  DCAR_025840 167 QDHVLAERKRRERLTQRFIALSSLVPGL-----KKMDKASVLEDATKYIKQLQ 214
                  56999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.355164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-12167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16168223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-17169223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.81E-13169218No hitNo description
SMARTSM003534.6E-16170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDMSSALWLS ELEMDDPIVS HQQSLMSVLD HEMAAFNSSY SSDSYSAYDN QSVIGNPKHD  60
LVFNSEMDVI MKPVKLPRTN IINTSSTTKG AIPKRPSPAS SSAIISFDKA ESTPIQWDDK  120
ELTYLIKPAK KENLDTNFGD DQGDFSYLYN PNANTTFPVK RTPLQAQDHV LAERKRRERL  180
TQRFIALSSL VPGLKKMDKA SVLEDATKYI KQLQERVKTL EHKSIVMTTD AKNQGVASLK  240
RSRIYLDEES SSSNEDYDYR PRESLPEIEV RMSEGNVLFR VQSKNIAGLA VKLFSKIEKL  300
NLTIISSSVM PFSNSSLLIT IISQVLQLID F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218090.10.0PREDICTED: transcription factor NAI1-like
TrEMBLA0A164UDW50.0A0A164UDW5_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.11e-36bHLH family protein