PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024520
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 226aa    MW: 25593.5 Da    PI: 8.4667
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024520genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-0581103123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F+++  L  H++ H
  DCAR_024520  81 FECQYCSKEFNNSQALGGHQNAH 103
                  89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-678108No hitNo description
Gene3DG3DSA:3.30.160.603.0E-578107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.00981108IPR007087Zinc finger, C2H2
PfamPF139122.3E-681105IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MKQNISILSS TWDEKNHHLS SKSYIKKKLR LFGTEVEFCK YIHSTPDAGP DGSANSSSTS  60
SSERQMVHVG KCATSDEGKK FECQYCSKEF NNSQALGGHQ NAHKKERMKK KRLQLEARNA  120
SMRRYLEPFQ NISSFGYHGS APLFYDTSYN VPTITFSDSD SHICFTPYDQ NSVSKCYSVP  180
ENLPYHKDFC KFTPNHTDHS VAIQSPRFST SELNYLSLDL HLGFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217140.11e-169PREDICTED: zinc finger protein 5-like
TrEMBLA0A164TDG51e-168A0A164TDG5_DAUCS; Uncharacterized protein
STRINGVIT_01s0026g00850.t015e-55(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.16e-14zinc finger protein 5