PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_022855 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 277aa MW: 31142.9 Da PI: 6.8766 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.5 | 1.8e-30 | 120 | 179 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv+rs ed ++++ tYegeHnh+ DCAR_022855 120 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApNCPVKKKVQRSVEDASIIVATYEGEHNHT 179 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 26.28 | 115 | 181 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-29 | 115 | 180 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-25 | 117 | 180 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-34 | 120 | 180 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-24 | 121 | 178 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009617 | Biological Process | response to bacterium | ||||
GO:0009685 | Biological Process | gibberellin metabolic process | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 277 aa Download sequence Send to blast |
MDSPTVNLSL GINLNSNPPH YPDDDPTDHL VEELNRMNTE NERLTKLLTV VCENYKTTQT 60 QLADLVMQKN DNNRKRVAED DIFPTNYYVE GDSYKRFKEI KTDVSRVLVR ADPSNKSLVV 120 KDGYQWRKYG QKVTRDNPSP RAYYKCSFAP NCPVKKKVQR SVEDASIIVA TYEGEHNHTM 180 SSSSPREPHQ NLVSTTSSSS PRAKSVSAGH NKDVEIDRMH QPKLCTDVVA EGTAPLVQQF 240 LVEKMASSLT RNPSFTEALA AAISTKILEY DLMDGW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-21 | 119 | 180 | 13 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017255715.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 isoform X2 | ||||
TrEMBL | A0A161ZQB5 | 0.0 | A0A161ZQB5_DAUCS; Uncharacterized protein | ||||
STRING | XP_010265617.1 | 6e-78 | (Nelumbo nucifera) | ||||
STRING | XP_010275778.1 | 3e-78 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4500 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80840.1 | 4e-64 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_022855 |