PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_022398

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C3H

Protein Properties

Length: 729aa MW: 79127.8 Da PI: 6.4069

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_022398	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.8	7.9e-08	306	326	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd C +aHg DCAR_022398 306 PCPDFRK-GTCRRGDMCEYAHG 326 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	3.26E-15	39	158	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.4E-9	76	151	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.584	82	158	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	7.3E-16	82	162	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.31E-12	82	160	No hit	No description
SMART	SM00248	0.0045	82	112	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.472	117	152	IPR002110	Ankyrin repeat
SMART	SM00248	0.0063	117	149	IPR002110	Ankyrin repeat
SMART	SM00356	3.1E-6	301	327	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-4	306	328	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.0E-5	306	326	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.911	306	328	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.8E-5	334	364	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.343	336	360	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	16	336	359	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence Send to blast
MCGVTKSTST SSTQSNGESK SDKQNMGPLT VETEETFSNL LEFAANNDFE AFKASVEENS 60 LAIDEVGLWY VRKKGSKQIV LEHRTPLMVA ATYGSLDVIK FIISQPSVDV NLACGPDKCT 120 ALHCSASGGS VNAVDVVKLL LGVGADPHIK DANGQRAVDV IVAPPKVLNV KASLEEMLLG 180 SVSDGSVEEC KLRVSISSSS YSPSLSSSPD NGSPCSPSDL VSSPMLSKFT DVPNGAISEK 240 KEYPVDPSLP DIKNSIYSTD EFRMFSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF 300 HYSCVPCPDF RKGTCRRGDM CEYAHGVFEC WLHPAQYRTR LCKDVTSCDR RVCFFAHTPE 360 ELRPLYVSTG SAVPSPRSSA SAASVMDMAV AMNLLPGSPS SASMMSPSAF NQPMSPSGNG 420 AHSSLAWPQP NVPTLHLPGS NMQSSRLRSS LSARDIPPED LQLLQDMDAH QLLLNDLACL 480 SQSRPSPVSL SRSGRPKTLT PSNLEDLFSA ELASSPRYSD QMASASAFSP SHRSAVFNQF 540 QQQQNMLSPI NTNVFSPKNA DHPLLQASYS VSSPGRMSPR TVDPISPMGS RQTAFAQREF 600 QQPQQMRCLS SRDLSTNNVS MVGSQVNSWS KWSSPSGIVD WSVKGDEHSW LPRSSSNDLN 660 KNTEEPDISW VQSLVKESPP EMKDKLPASV ASAAPSGEGL KSNPQAESVD HTVLAAWIEQ 720 MQLDRLSV*

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence Send to blast

MCGVTKSTST SSTQSNGESK SDKQNMGPLT VETEETFSNL LEFAANNDFE AFKASVEENS  60
LAIDEVGLWY VRKKGSKQIV LEHRTPLMVA ATYGSLDVIK FIISQPSVDV NLACGPDKCT  120
ALHCSASGGS VNAVDVVKLL LGVGADPHIK DANGQRAVDV IVAPPKVLNV KASLEEMLLG  180
SVSDGSVEEC KLRVSISSSS YSPSLSSSPD NGSPCSPSDL VSSPMLSKFT DVPNGAISEK  240
KEYPVDPSLP DIKNSIYSTD EFRMFSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGTCRRGDM CEYAHGVFEC WLHPAQYRTR LCKDVTSCDR RVCFFAHTPE  360
ELRPLYVSTG SAVPSPRSSA SAASVMDMAV AMNLLPGSPS SASMMSPSAF NQPMSPSGNG  420
AHSSLAWPQP NVPTLHLPGS NMQSSRLRSS LSARDIPPED LQLLQDMDAH QLLLNDLACL  480
SQSRPSPVSL SRSGRPKTLT PSNLEDLFSA ELASSPRYSD QMASASAFSP SHRSAVFNQF  540
QQQQNMLSPI NTNVFSPKNA DHPLLQASYS VSSPGRMSPR TVDPISPMGS RQTAFAQREF  600
QQPQQMRCLS SRDLSTNNVS MVGSQVNSWS KWSSPSGIVD WSVKGDEHSW LPRSSSNDLN  660
KNTEEPDISW VQSLVKESPP EMKDKLPASV ASAAPSGEGL KSNPQAESVD HTVLAAWIEQ  720
MQLDRLSV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017258550.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A164VET2	0.0	A0A164VET2_DAUCS; Uncharacterized protein
STRING	XP_009799603.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	DCAR_022398

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]